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(-) Description

Title :  STATIONARY PHASE SURVIVAL PROTEIN YUIC FROM B.SUBTILIS
 
Authors :  D. H. X. Quay, A. R. Cole, A. Cryar, K. Thalassinos, M. A. Williams, S. Bha N. H. Keep
Date :  07 Oct 14  (Deposition) - 08 Jul 15  (Release) - 21 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.76
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Lytic Transglycosylase, Peptidoglycan Remodelling, Stationary Phase, Mlta, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. H. Quay, A. R. Cole, A. Cryar, K. Thalassinos, M. A. Williams, S. Bhakta, N. H. Keep
Structure Of The Stationary Phase Survival Protein Yuic Fro B. Subtilis.
Bmc Struct. Biol. V. 15 12 2015
PubMed-ID: 26163297  |  Reference-DOI: 10.1186/S12900-015-0039-Z

(-) Compounds

Molecule 1 - YUIC
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PNIC28-BSA4
    Expression System Strain: ROSETTA-2
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: YUIC, BSU32070
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 224308
    Strain: 168

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1EDO4Ligand/Ion1,2-ETHANEDIOL
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
1EDO8Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:93 , ALA A:127 , ASP A:151 , THR A:152 , GLY A:153 , ASP A:162 , EDO A:304binding site for residue EDO A 301
2AC2SOFTWAREARG A:87 , LYS A:177 , THR A:179 , ASP A:181 , HOH A:424binding site for residue EDO A 302
3AC3SOFTWAREGLN A:86 , ARG A:87 , ASN A:159 , SER A:205 , VAL A:208binding site for residue EDO A 303
4AC4SOFTWAREALA A:95 , GLY A:96 , LEU A:111 , ASP A:151 , EDO A:301 , HOH A:485 , HOH A:500binding site for residue EDO A 304

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WLI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WLI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WLI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WLI)

(-) Exons   (0, 0)

(no "Exon" information available for 4WLI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:138
                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhh.....eeeee.........................eeeeee.........eeee...eeeeeee........eeeee..hhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4wli A  73 PLEEAFDWDEYPVQRVTATGYTAGGKNPGDPLYGLTYSGVKVKRDLYSTVAADPSVFPIGTILFIPNYGLGVVADTGSAIKGNRLDLYFETVKDVYNEWGKKTLDVYVIKKGTGKITEDELEKLNETKSLQVFRNQYK 214
                                    82        92   ||  106       116       126       136       146       156       166       176       186       196       206        
                                                  96|                                                                                                                 
                                                  101
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WLI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WLI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WLI)

(-) Gene Ontology  (3, 3)

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  4wli
    Family and Domain Information: ProDom | SYSTERS
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  YUIC_BACSU | O32108
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  YUIC_BACSU | O32108
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        YUIC_BACSU | O32108: 4wjt 4wlk

(-) Related Entries Specified in the PDB File

4wjt 4WJT HAS SAME PROTEIN WITH NAG BOUND IN THE ACTIVE SITE