4WKY - JenaLib

Title :   STREPTOMCYES ALBUS JA3453 OXAZOLOMYCIN KETOSYNTHASE DOMAIN OZMN KS2

Authors :   M. E. Cuff, J. C. Mack, M. Endres, G. Babnigg, C. A. Bingman, R. Yennamall J. R. Lohman, M. Ma, B. Shen, G. N. Phillips Jr. , A. Joachimiak, Midwes For Structural Genomics (Mcsg), Enzyme Discovery For Natural Biosynthesis (Natpro)

Date :   03 Oct 14 (Deposition) - 29 Oct 14 (Release) - 22 Feb 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym./Biol. Unit : A,B

Keywords :   Beta-Ketoacyl Synthase, Polyketide, Streptomyces Albus, Pks, Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Enzyme Discovery For Natural Product Biosynthesis, Natpro, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. R. Lohman, M. Ma, J. Osipiuk, B. Nocek, Y. Kim, C. Chang, M. Cuff, J. Mack, L. Bigelow, H. Li, M. Endres, G. Babnigg, A. Joachimiak, G. N. Phillips, B. Shen
Structural And Evolutionary Relationships Of "At-Less" Type I Polyketide Synthase Ketosynthases.
Proc. Natl. Acad. Sci. Usa V. 112 12693 2015
PubMed-ID: 26420866 | Reference-DOI: 10.1073/PNAS.1515460112

Compounds

Molecule 1 - BETA-KETOACYL SYNTHASE
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG68
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 15-606
	Gene	:	OZMN, PKS
	Organism Scientific	:	STREPTOMYCES ALBUS
	Organism Taxid	:	1888

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 18)

Sites (10, 10)

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	LYS A:280 , ARG A:424 , GLN A:442 , HOH A:1077	binding site for residue SO4 A 701
02	AC2	SOFTWARE	TYR A:175 , HOH A:1069 , HOH A:1076	binding site for residue GOL A 702
03	AC3	SOFTWARE	ARG A:124 , ARG A:501	binding site for residue EDO A 703
04	AC4	SOFTWARE	HIS A:503 , ARG A:504	binding site for residue EDO A 704
05	AC5	SOFTWARE	SER A:293 , TYR A:294 , HOH A:1084 , TYR B:175	binding site for residue EDO A 705
06	AC6	SOFTWARE	ARG A:143 , HIS A:144 , PRO A:222 , TRP A:595 , HOH A:864	binding site for residue SO4 A 706
07	AC7	SOFTWARE	LYS B:280 , ARG B:424 , GLN B:442	binding site for residue SO4 B 701
08	AC8	SOFTWARE	THR B:466 , ARG B:467 , THR B:468 , HIS B:505 , HOH B:1064	binding site for residue EDO B 702
09	AC9	SOFTWARE	GLY B:31 , ILE B:49 , HOH B:910	binding site for residue EDO B 703
10	AD1	SOFTWARE	ARG B:143 , HIS B:144 , PRO B:222 , TRP B:595 , HOH B:846	binding site for residue SO4 B 704

SS Bonds (0, 0)

Cis Peptide Bonds (5, 5)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:577
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeee.....hhhhhhhhhhh.....ee.hhhhhhhh..hhhhhhh..ee.ee.......ee.......hhhhhhh.hhhhhhhhhhhhhhhhhhh.........eeeeeee...hhhhhh........hhhhhhhhhhhhh..hhhhhhhhhhh....eeeeehhhhhhhhhhhhhhhhhhh....eeeeeeee........ee...........................eeeeeeeeehhhhhhhh....eeeeeeeeee...........hhhhhhhhhhhhhhhhh.hhhhh.eee.......hhhhhhhhhhhhhhhh.......eeee.hhhhhh.hhhhhhhhhhhhhhhhhhhhee.............hhhhh.eee....ee.......eeeeeee....eeeeeeee...............eeeeeee.hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.....eeeeeee.hhhhhhhhhhhh....eeeee...ee......hhhhhhhhhhhhhhh..eehhhhhh.................ee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wky A  16 SGNDIAIVGmAGRFPGADSVGEFWELLRSGREGITRFSDEELAAAGVPAALRADPAYVRAHGILPDVDLFDTGFFEFTPAEAEVIDPQHRLFLESCHTALEDAGYDPRRYDGLISVYGGAAINTYLQRHVLPSIDQTATSDHFRVmVGNDKDFLATRVSYKLDLRGPSYSVQTACSTSLVAIHLACQGLINGECDmALAGGVTVKLPQARGYLYEEGAILSPDGRVRTFDAEAGGTVLGNGVGIVVLKLLADALDAGDTIHAVIKGTATNNDGSLKVSYAAPGKEGQAAVVAEAHAVSGTEPESVTYVEAHGTATRLGDPVEVAALTDAFRRGTSDTGFCAIGSLKSNVGHLDAAAGVAGVIKTALmLRHRSLVPTLNHERPNPAIDFAATPFYVNTETRPWAGEGPLRAGVSSFGIGGTNAHAILQEAPEQGPTEPSPRAEQLLVLSARTRTALDTLTDDLADHLEANPGTDLADAAHTLAVGRRAHRHRRAVICADPARAVRALRERAEPDCATAEATGAFTPGPGLSGRALLEAVRTAWLDGAEVDWARFYAGERRRRVPLPTYPFEGRRVWLE 597
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155     | 165       175       185       195       205     | 215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375      |385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       540       550       560       570       580       590       
                                    25-MSE                                                                                                                                 161-MSE                                           211-MSE                                                                                                                                                                    382-MSE                                                                                                                                                 534|                                                         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 540

Chain B from PDB  Type:PROTEIN  Length:576
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeeeeee.....hhhhhhhhhhh.....ee.hhhhhhhh..hhhhhh...ee.ee.......eehhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhh.hhhhh...eeeeeee...hhhhhh........hhhhhhhhhhhhh..hhhhhhhhhhh....eeeeehhhhhhhhhhhhhhhhhhh....eeeeeeee........ee...........................eeeeeeeeehhhhhhhh....eeeeeeeeee...........hhhhhhhhhhhhhhhhh.hhhhh.eee.......hhhhhhhhhhhhhhhh.......eeee.hhhhhh.hhhhhhhhhhhhhhhhhhhhee.............hhhhh.eee....ee......eeeeeee....eeeeeeee...............eeeeeee.hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.....eeeeeee.hhhhhhhhhhhh....eeeee...ee....hhhhhhhhhhhhhh..eehhhhhh.................ee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4wky B  15 VSGNDIAIVGmAGRFPGADSVGEFWELLRSGREGITRFSDEELAAAGVPAALRADPAYVRAHGILPDVDLFDTGFFEFTPAEAEVIDPQHRLFLESCHTALEDAGYDPRRYDGLISVYGGAAINTYLQRHVLPSIDQTATSDHFRVmVGNDKDFLATRVSYKLDLRGPSYSVQTACSTSLVAIHLACQGLINGECDmALAGGVTVKLPQARGYLYEEGAILSPDGRVRTFDAEAGGTVLGNGVGIVVLKLLADALDAGDTIHAVIKGTATNNDGSLKVSYAAPGKEGQAAVVAEAHAVSGTEPESVTYVEAHGTATRLGDPVEVAALTDAFRRGTSDTGFCAIGSLKSNVGHLDAAAGVAGVIKTALmLRHRSLVPTLNHERPNPAIDFAATPFYVNTETRPWAGGPLRAGVSSFGIGGTNAHAILQEAPEQGPTEPSPRAEQLLVLSARTRTALDTLTDDLADHLEANPGTDLADAAHTLAVGRRAHRHRRAVICADPARAVRALRERAEPDCATAEATGAFTPGSGRALLEAVRTAWLDGAEVDWARFYAGERRRRVPLPTYPFEGRRVWLEPP 599
                                    24|       34        44        54        64        74        84        94       104       114       124       134       144       154      |164       174       184       194       204      |214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414    || 425       435       445       455       465       475       485       495       505       515       525       540     ||553       563       573       583       593      
                                     25-MSE                                                                                                                                 161-MSE                                           211-MSE                                                                                                                                                                    382-MSE                              419|                                                                                                              534|   546|                                                 
                                                                                                                                                                                                                                                                                                                                                                                                                                               421                                                                                                               540    550

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (3, 3)

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	Cis Peptide Bonds
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		Glu B:526 - Pro B:527	[ RasMol ]
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