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(-) Description

Title :  STREPTOMCYES ALBUS JA3453 OXAZOLOMYCIN KETOSYNTHASE DOMAIN OZMN KS2
 
Authors :  M. E. Cuff, J. C. Mack, M. Endres, G. Babnigg, C. A. Bingman, R. Yennamall J. R. Lohman, M. Ma, B. Shen, G. N. Phillips Jr. , A. Joachimiak, Midwes For Structural Genomics (Mcsg), Enzyme Discovery For Natural Biosynthesis (Natpro)
Date :  03 Oct 14  (Deposition) - 29 Oct 14  (Release) - 22 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Beta-Ketoacyl Synthase, Polyketide, Streptomyces Albus, Pks, Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Enzyme Discovery For Natural Product Biosynthesis, Natpro, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. R. Lohman, M. Ma, J. Osipiuk, B. Nocek, Y. Kim, C. Chang, M. Cuff, J. Mack, L. Bigelow, H. Li, M. Endres, G. Babnigg, A. Joachimiak, G. N. Phillips, B. Shen
Structural And Evolutionary Relationships Of "At-Less" Type I Polyketide Synthase Ketosynthases.
Proc. Natl. Acad. Sci. Usa V. 112 12693 2015
PubMed-ID: 26420866  |  Reference-DOI: 10.1073/PNAS.1515460112

(-) Compounds

Molecule 1 - BETA-KETOACYL SYNTHASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG68
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 15-606
    Gene: OZMN, PKS
    Organism Scientific: STREPTOMYCES ALBUS
    Organism Taxid: 1888

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 18)

Asymmetric/Biological Unit (4, 18)
No.NameCountTypeFull Name
1EDO5Ligand/Ion1,2-ETHANEDIOL
2GOL1Ligand/IonGLYCEROL
3MSE8Mod. Amino AcidSELENOMETHIONINE
4SO44Ligand/IonSULFATE ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:280 , ARG A:424 , GLN A:442 , HOH A:1077binding site for residue SO4 A 701
02AC2SOFTWARETYR A:175 , HOH A:1069 , HOH A:1076binding site for residue GOL A 702
03AC3SOFTWAREARG A:124 , ARG A:501binding site for residue EDO A 703
04AC4SOFTWAREHIS A:503 , ARG A:504binding site for residue EDO A 704
05AC5SOFTWARESER A:293 , TYR A:294 , HOH A:1084 , TYR B:175binding site for residue EDO A 705
06AC6SOFTWAREARG A:143 , HIS A:144 , PRO A:222 , TRP A:595 , HOH A:864binding site for residue SO4 A 706
07AC7SOFTWARELYS B:280 , ARG B:424 , GLN B:442binding site for residue SO4 B 701
08AC8SOFTWARETHR B:466 , ARG B:467 , THR B:468 , HIS B:505 , HOH B:1064binding site for residue EDO B 702
09AC9SOFTWAREGLY B:31 , ILE B:49 , HOH B:910binding site for residue EDO B 703
10AD1SOFTWAREARG B:143 , HIS B:144 , PRO B:222 , TRP B:595 , HOH B:846binding site for residue SO4 B 704

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WKY)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1Leu A:221 -Pro A:222
2Glu A:526 -Pro A:527
3Leu B:221 -Pro B:222
4Gly B:421 -Pro B:422
5Glu B:526 -Pro B:527

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WKY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WKY)

(-) Exons   (0, 0)

(no "Exon" information available for 4WKY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:577
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeee.....hhhhhhhhhhh.....ee.hhhhhhhh..hhhhhhh..ee.ee.......ee.......hhhhhhh.hhhhhhhhhhhhhhhhhhh.........eeeeeee...hhhhhh........hhhhhhhhhhhhh..hhhhhhhhhhh....eeeeehhhhhhhhhhhhhhhhhhh....eeeeeeee........ee...........................eeeeeeeeehhhhhhhh....eeeeeeeeee...........hhhhhhhhhhhhhhhhh.hhhhh.eee.......hhhhhhhhhhhhhhhh.......eeee.hhhhhh.hhhhhhhhhhhhhhhhhhhhee.............hhhhh.eee....ee.......eeeeeee....eeeeeeee...............eeeeeee.hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.....eeeeeee.hhhhhhhhhhhh....eeeee...ee......hhhhhhhhhhhhhhh..eehhhhhh.................ee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wky A  16 SGNDIAIVGmAGRFPGADSVGEFWELLRSGREGITRFSDEELAAAGVPAALRADPAYVRAHGILPDVDLFDTGFFEFTPAEAEVIDPQHRLFLESCHTALEDAGYDPRRYDGLISVYGGAAINTYLQRHVLPSIDQTATSDHFRVmVGNDKDFLATRVSYKLDLRGPSYSVQTACSTSLVAIHLACQGLINGECDmALAGGVTVKLPQARGYLYEEGAILSPDGRVRTFDAEAGGTVLGNGVGIVVLKLLADALDAGDTIHAVIKGTATNNDGSLKVSYAAPGKEGQAAVVAEAHAVSGTEPESVTYVEAHGTATRLGDPVEVAALTDAFRRGTSDTGFCAIGSLKSNVGHLDAAAGVAGVIKTALmLRHRSLVPTLNHERPNPAIDFAATPFYVNTETRPWAGEGPLRAGVSSFGIGGTNAHAILQEAPEQGPTEPSPRAEQLLVLSARTRTALDTLTDDLADHLEANPGTDLADAAHTLAVGRRAHRHRRAVICADPARAVRALRERAEPDCATAEATGAFTPGPGLSGRALLEAVRTAWLDGAEVDWARFYAGERRRRVPLPTYPFEGRRVWLE 597
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155     | 165       175       185       195       205     | 215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375      |385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       540       550       560       570       580       590       
                                    25-MSE                                                                                                                                 161-MSE                                           211-MSE                                                                                                                                                                    382-MSE                                                                                                                                                 534|                                                         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 540                                                         


Chain B from PDB  Type:PROTEIN  Length:576
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeeeeee.....hhhhhhhhhhh.....ee.hhhhhhhh..hhhhhh...ee.ee.......eehhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhh.hhhhh...eeeeeee...hhhhhh........hhhhhhhhhhhhh..hhhhhhhhhhh....eeeeehhhhhhhhhhhhhhhhhhh....eeeeeeee........ee...........................eeeeeeeeehhhhhhhh....eeeeeeeeee...........hhhhhhhhhhhhhhhhh.hhhhh.eee.......hhhhhhhhhhhhhhhh.......eeee.hhhhhh.hhhhhhhhhhhhhhhhhhhhee.............hhhhh.eee....ee......eeeeeee....eeeeeeee...............eeeeeee.hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.....eeeeeee.hhhhhhhhhhhh....eeeee...ee....hhhhhhhhhhhhhh..eehhhhhh.................ee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4wky B  15 VSGNDIAIVGmAGRFPGADSVGEFWELLRSGREGITRFSDEELAAAGVPAALRADPAYVRAHGILPDVDLFDTGFFEFTPAEAEVIDPQHRLFLESCHTALEDAGYDPRRYDGLISVYGGAAINTYLQRHVLPSIDQTATSDHFRVmVGNDKDFLATRVSYKLDLRGPSYSVQTACSTSLVAIHLACQGLINGECDmALAGGVTVKLPQARGYLYEEGAILSPDGRVRTFDAEAGGTVLGNGVGIVVLKLLADALDAGDTIHAVIKGTATNNDGSLKVSYAAPGKEGQAAVVAEAHAVSGTEPESVTYVEAHGTATRLGDPVEVAALTDAFRRGTSDTGFCAIGSLKSNVGHLDAAAGVAGVIKTALmLRHRSLVPTLNHERPNPAIDFAATPFYVNTETRPWAGGPLRAGVSSFGIGGTNAHAILQEAPEQGPTEPSPRAEQLLVLSARTRTALDTLTDDLADHLEANPGTDLADAAHTLAVGRRAHRHRRAVICADPARAVRALRERAEPDCATAEATGAFTPGSGRALLEAVRTAWLDGAEVDWARFYAGERRRRVPLPTYPFEGRRVWLEPP 599
                                    24|       34        44        54        64        74        84        94       104       114       124       134       144       154      |164       174       184       194       204      |214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414    || 425       435       445       455       465       475       485       495       505       515       525       540     ||553       563       573       583       593      
                                     25-MSE                                                                                                                                 161-MSE                                           211-MSE                                                                                                                                                                    382-MSE                              419|                                                                                                              534|   546|                                                 
                                                                                                                                                                                                                                                                                                                                                                                                                                               421                                                                                                               540    550
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WKY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WKY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WKY)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Glu A:526 - Pro A:527   [ RasMol ]  
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    Gly B:421 - Pro B:422   [ RasMol ]  
    Leu A:221 - Pro A:222   [ RasMol ]  
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 Related Entries

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(-) Related Entries Specified in the PDB File

4ope 4opf 4oqj 4qyr 4tkt 4zdn