4QYR - JenaLib

Title :   STREPTOMYCES PLATENSIS ISOMIGRASTATIN KETOSYNTHASE DOMAIN MGSE KS3

Authors :   Y. Kim, H. Li, M. Endres, J. Babnigg, C. A. Bingman, R. Yennamalli, J. R. L M. Ma, B. Shen, G. N. Phillips Jr. , A. Joachimiak, Midwest Center Fo Structural Genomics (Mcsg), Enzyme Discovery For Natural Pro Biosynthesis (Natpro)

Date :   25 Jul 14 (Deposition) - 20 Aug 14 (Release) - 07 Dec 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.90

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Enzyme Discovery For Natural Product Biosynthesis, Natpro, Alpha-Beta Structure, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. R. Lohman, M. Ma, J. Osipiuk, B. Nocek, Y. Kim, C. Chang, M. Cuff, J. Mack, L. Bigelow, H. Li, M. Endres, G. Babnigg, A. Joachimiak, G. N. Phillips, B. Shen
Structural And Evolutionary Relationships Of "At-Less" Type I Polyketide Synthase Ketosynthases.
Proc. Natl. Acad. Sci. Usa V. 112 12693 2015
PubMed-ID: 26420866 | Reference-DOI: 10.1073/PNAS.1515460112

Compounds

Molecule 1 - AT-LESS POLYKETIDE SYNTHASE
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG73
	Expression System Strain	:	BL21(DE3) GOLD
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 2542-3153
	Organism Scientific	:	STREPTOMYCES PLATENSIS SUBSP. ROSACEUS
	Organism Taxid	:	684832

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 13)

Asymmetric Unit (4, 13)

No.	Name	Count	Type	Full Name
1	ACY	1	Ligand/Ion	ACETIC ACID
2	CL	1	Ligand/Ion	CHLORIDE ION
3	GOL	1	Ligand/Ion	GLYCEROL
4	MSE	10	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (3, 24)

No.	Name	Count	Type	Full Name
1	ACY	2	Ligand/Ion	ACETIC ACID
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	GOL	2	Ligand/Ion	GLYCEROL
4	MSE	20	Mod. Amino Acid	SELENOMETHIONINE

Sites (3, 3)

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:2582 , ARG A:2583 , ARG A:2604 , ILE A:2605 , GLU A:2606 , GLY A:2607 , VAL A:2608 , ASP A:2609	BINDING SITE FOR RESIDUE GOL A 3201
2	AC2	SOFTWARE	GLU A:2705 , VAL A:2707 , ARG A:2720	BINDING SITE FOR RESIDUE ACY A 3202
3	AC3	SOFTWARE	TRP A:3109 , TRP A:3117	BINDING SITE FOR RESIDUE CL A 3203

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:590
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeee.....hhhhhhhhhhhh....ee..hhhhh..hhhhhhhh.....ee.......ee.......hhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhh...eeeeee...hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh....eeee.hhhhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhhhhhh.......................eeeeeeeeehhhhhhh.....eeeeeeeeee..........hhhhhhhhhhhhh...hhhhh.eee.......hhhhhhhhhhhhhhhhhhhhh.........eeee.hhhhhh.hhhhhhhhhhhhhhhhhhhhee..................eee....ee..............eeeeeee....eeeeeeee.........eeeeeee.hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh.....eeeeeee.hhhhhhhhhhhhhh.......eee............hhhhhhhhhhhhhhhhhhhhhh....hhhhhh.................ee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4qyr A 2544 DDAVAIVGAAGRFPGADDLDTFWQQLRAGEDLIADYPGDRFDGGPYAEVVARADFPKFAGRIEGVDRFDADFFHLSRLEAELmDPQHRLALETVWAALENGGYAPARLPENTGVYFGVSGSDYHHLLNASGVAPDGFTATGNAHSmLANRISYVLDVHGPSEPVDTACSSSLVALHRAVEHIRSGRCEmAIAGGVNLLLSVDTFAATHmAGmLSPDGRCKTFSAGADGYVRSEGVAAVLLKPLAQAQRDGDAIWGVVRGSAENHGGRAGSLTAPNGKAQAALIQDAmRGIDPDSIGYVEAHGTGTGLGDPVEVNALDSAYRALRTAEGGPPHAARPCALGSVKTNIGHAESAAGLAGVLKVLLAmRHRELPPALHCDRLNPHLPLDGGFEVVRELRRWEPCTDATGRPWPLRAGVSSFGFGGANAHVVLEAPPVPPAAPQAIVLSARDDDRLRATAGRLRDFLDRARRDGHAPDLADLAFTLQVGREAmERRLGFVVGSmDDVLGTLDRFFAGDEPSGWHTGGIRRGVRREAEQAPEVTRALHDGRLDRVTALWCDGAPVDWQAmHPTGERRAVRLPAYPFACDRYWVPA 3145
                                  2553      2563      2573      2583      2593      2603      2613      2623  |   2633      2643      2653      2663      2673      2683     |2693      2703      2713      2723      2733      2743      2753 |    2763      2773      2783      2793      2803      2813      2823      2833      2843      2853      2863      2873      2883      2893      2903    | 2913      2923      2933      2943      2953      2963      2973      2991      3001      3011      3021      3031      3041      3051      3061      3071     |3085      3095      3105      3115    | 3125      3135      3145
                                                                                                           2626-MSE                                                       2689-MSE                                   2732-MSE            2752-MSE                                                                      2830-MSE                                                                      2908-MSE                                                                2980|                                               3040-MSE   3051-MSE                  3077|                                  3120-MSE                     
                                                                                                                                                                                                                                            2755-MSE                                                                                                                                                                                                                          2989                                                                                     3082

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (3, 3)

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	Ligands, Modified Residues, Ions
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	Cis Peptide Bonds
		Tyr A:2579 - Pro A:2580	[ RasMol ]

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		Biological Unit 1	[ Jena3D ]

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	4qyr
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Description