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(-) Description

Title :  STRUCTURE OF THE CDC25B PHOSPHATASE CATALYTIC DOMAIN WITH BOUND LIGAND
 
Authors :  G. L. Lund, S. Dudkin, D. Borkin, W. Ni, J. Grembecka, T. Cierpicki
Date :  20 Sep 14  (Deposition) - 10 Dec 14  (Release) - 04 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.62
Chains :  Asym./Biol. Unit :  A
Keywords :  Phosphatase, Inhibitor, Fragment, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Lund, S. Dudkin, D. Borkin, W. Ni, J. Grembecka, T. Cierpicki
Inhibition Of Cdc25B Phosphatase Through Disruption Of Protein-Protein Interaction.
Acs Chem. Biol. V. 10 390 2015
PubMed-ID: 25423142  |  Reference-DOI: 10.1021/CB500883H

(-) Compounds

Molecule 1 - M-PHASE INDUCER PHOSPHATASE 2
    Chains: A
    EC Number: 3.1.3.48
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: CATALYTIC DOMAIN (UNP RESIDUES 386-565)
    Gene: CDC25B, CDC25HU2
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DUAL SPECIFICITY PHOSPHATASE CDC25B

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric/Biological Unit (3, 8)
No.NameCountTypeFull Name
18H81Ligand/Ion2-FLUORO-4-HYDROXYBENZONITRILE
2GOL1Ligand/IonGLYCEROL
3SO46Ligand/IonSULFATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:473 , GLU A:474 , PHE A:475 , SER A:476 , SER A:477 , GLU A:478 , ARG A:479 , HOH A:982binding site for residue SO4 A 601
2AC2SOFTWAREGLY A:393 , LYS A:394 , LYS A:509 , HOH A:813 , HOH A:822 , HOH A:888 , HOH A:892 , HOH A:918binding site for residue SO4 A 602
3AC3SOFTWAREARG A:488 , ARG A:492 , 8H8 A:607 , HOH A:737binding site for residue SO4 A 603
4AC4SOFTWAREILE A:417 , ARG A:466 , HOH A:984binding site for residue SO4 A 604
5AC5SOFTWAREARG A:482 , HOH A:832binding site for residue SO4 A 605
6AC6SOFTWAREHIS A:375 , LYS A:420 , ILE A:458 , HOH A:719 , HOH A:953binding site for residue SO4 A 606
7AC7SOFTWARELEU A:398 , CYS A:484 , ARG A:485 , ARG A:488 , MET A:505 , SO4 A:603 , HOH A:711 , HOH A:799 , HOH A:814 , HOH A:824 , HOH A:873binding site for residue 8H8 A 607
8AC8SOFTWARELEU A:445 , GLU A:446 , ARG A:447 , ARG A:482 , THR A:547 , ARG A:548 , HOH A:899 , HOH A:959binding site for residue GOL A 608

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WH7)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Tyr A:497 -Pro A:498
2Glu A:524 -Pro A:525

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WH7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WH7)

(-) Exons   (0, 0)

(no "Exon" information available for 4WH7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:178
                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........................eehhhhhhhhhh......eeeeeeee..hhhhhhh.ee...ee..hhhhhhhhhhh..........eeeeeee.....hhhhhhhhhhhhhhhhh..........eeee.hhhhhhhhhh...ee........hhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wh7 A 374 DHRELIGDYSKAFLLQTVDGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSLDKRVILIFHSEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFKDELKTFRLKTRSWA 551
                                   383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WH7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WH7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WH7)

(-) Gene Ontology  (27, 27)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Glu A:524 - Pro A:525   [ RasMol ]  
    Tyr A:497 - Pro A:498   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MPIP2_HUMAN | P30305: 1cwr 1cws 1cwt 1qb0 1ym9 1ymd 1ymk 1yml 1ys0 2a2k 2ifd 2ifv 2uzq 3fqt 3fqu 4wh9

(-) Related Entries Specified in the PDB File

4wh9