Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)

(-) Description

Title :  PROTEIN PHOSPHATASE, NEW CRYSTAL FORM
 
Authors :  R. C. Hillig, U. Eberspaecher
Date :  01 May 07  (Deposition) - 24 Jun 08  (Release) - 05 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.38
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  Hydrolase, Cell Division, Phosphorylation, Dual Specificity, Mitosis, Cell Cycle, Phosphatase, Protein Phosphatase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  R. C. Hillig, U. Eberspaecher
New Crystal Form Of Protein Phosphatase Cdc25B Triggered By Guanidinium Chloride As An Additive
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - M-PHASE INDUCER PHOSPHATASE 2
    ChainsA, B, C, D, E, F
    EC Number3.1.3.48
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentCATALYTIC DOMAIN, RESIDUES 377-566
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymDUAL SPECIFICITY PHOSPHATASE CDC25B, CDC25B

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit ABCDEF
Biological Unit 1 (1x)AB    
Biological Unit 2 (1x)  CD  
Biological Unit 3 (1x)    EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric Unit (1, 6)
No.NameCountTypeFull Name
1PO46Ligand/IonPHOSPHATE ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1PO42Ligand/IonPHOSPHATE ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1PO42Ligand/IonPHOSPHATE ION
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1PO42Ligand/IonPHOSPHATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:473 , GLU A:474 , PHE A:475 , SER A:476 , SER A:477 , GLU A:478 , ARG A:479BINDING SITE FOR RESIDUE PO4 A1545
2AC2SOFTWARECYS B:473 , GLU B:474 , PHE B:475 , SER B:476 , SER B:477 , GLU B:478 , ARG B:479BINDING SITE FOR RESIDUE PO4 B1545
3AC3SOFTWARECYS C:473 , GLU C:474 , PHE C:475 , SER C:476 , SER C:477 , GLU C:478 , ARG C:479BINDING SITE FOR RESIDUE PO4 C1545
4AC4SOFTWARECYS D:473 , GLU D:474 , PHE D:475 , SER D:476 , SER D:477 , GLU D:478 , ARG D:479 , HOH D:2020BINDING SITE FOR RESIDUE PO4 D1545
5AC5SOFTWARECYS E:473 , GLU E:474 , PHE E:475 , SER E:476 , SER E:477 , GLU E:478 , ARG E:479BINDING SITE FOR RESIDUE PO4 E1545
6AC6SOFTWARECYS F:473 , GLU F:474 , PHE F:475 , SER F:476 , SER F:477 , GLU F:478 , ARG F:479BINDING SITE FOR RESIDUE PO4 F1545

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2UZQ)

(-) Cis Peptide Bonds  (10, 10)

Asymmetric Unit
No.Residues
1Glu A:524 -Pro A:525
2Glu B:524 -Pro B:525
3Tyr C:497 -Pro C:498
4Glu C:524 -Pro C:525
5Tyr D:497 -Pro D:498
6Glu D:524 -Pro D:525
7Tyr E:497 -Pro E:498
8Glu E:524 -Pro E:525
9Tyr F:497 -Pro F:498
10Glu F:524 -Pro F:525

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 6)

Asymmetric Unit (1, 6)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_020933E548KMPIP2_HUMANPolymorphism11570019A/B/C/D/E/FE534K

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (1, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_020933E548KMPIP2_HUMANPolymorphism11570019A/BE534K

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (1, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_020933E548KMPIP2_HUMANPolymorphism11570019C/DE534K

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (1, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_020933E548KMPIP2_HUMANPolymorphism11570019E/FE534K

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 6)

Asymmetric Unit (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RHODANESE_3PS50206 Rhodanese domain profile.MPIP2_HUMAN431-538
 
 
 
 
 
  6A:417-524
B:417-524
C:417-524
D:417-524
E:417-524
F:417-524
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RHODANESE_3PS50206 Rhodanese domain profile.MPIP2_HUMAN431-538
 
 
 
 
 
  2A:417-524
B:417-524
-
-
-
-
Biological Unit 2 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RHODANESE_3PS50206 Rhodanese domain profile.MPIP2_HUMAN431-538
 
 
 
 
 
  2-
-
C:417-524
D:417-524
-
-
Biological Unit 3 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RHODANESE_3PS50206 Rhodanese domain profile.MPIP2_HUMAN431-538
 
 
 
 
 
  2-
-
-
-
E:417-524
F:417-524

(-) Exons   (6, 36)

Asymmetric Unit (6, 36)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1bENST000002459601bENSE00001353605chr20:3776482-3777378897MPIP2_HUMAN1-67670--
1.2aENST000002459602aENSE00000858842chr20:3778269-3778396128MPIP2_HUMAN67-110440--
1.3ENST000002459603ENSE00000858844chr20:3779059-377911052MPIP2_HUMAN110-127180--
1.4ENST000002459604ENSE00000858846chr20:3780935-378097642MPIP2_HUMAN127-141150--
1.5ENST000002459605ENSE00000858850chr20:3781109-378114537MPIP2_HUMAN141-153130--
1.6aENST000002459606aENSE00000657911chr20:3781390-3781512123MPIP2_HUMAN154-194410--
1.6cENST000002459606cENSE00000858854chr20:3781618-3781740123MPIP2_HUMAN195-235410--
1.7ENST000002459607ENSE00000657912chr20:3781901-3782035135MPIP2_HUMAN236-280450--
1.8bENST000002459608bENSE00000858860chr20:3782369-378244981MPIP2_HUMAN281-307270--
1.9ENST000002459609ENSE00001482099chr20:3782571-3782747177MPIP2_HUMAN308-366590--
1.10ENST0000024596010ENSE00001190140chr20:3782928-378302396MPIP2_HUMAN367-398326A:374-384
B:374-384
C:374-384
D:374-384
E:374-384
F:374-384
11
11
11
11
11
11
1.11cENST0000024596011cENSE00001658249chr20:3783557-378361963MPIP2_HUMAN399-419216A:385-405
B:385-405
C:385-405
D:385-405
E:385-405
F:385-405
21
21
21
21
21
21
1.12bENST0000024596012bENSE00001645639chr20:3783755-378385399MPIP2_HUMAN420-452336A:406-438
B:406-438
C:406-438
D:406-438
E:406-438
F:406-438
33
33
33
33
33
33
1.13cENST0000024596013cENSE00001714978chr20:3784051-3784184134MPIP2_HUMAN453-497456A:439-483
B:439-483
C:439-483
D:439-483
E:439-483
F:439-483
45
45
45
45
45
45
1.14ENST0000024596014ENSE00001664388chr20:3785216-3785327112MPIP2_HUMAN497-534386A:483-520
B:483-520
C:483-520
D:483-520
E:483-520
F:483-520
38
38
38
38
38
38
1.15dENST0000024596015dENSE00001869849chr20:3785468-37867621295MPIP2_HUMAN535-580466A:521-545
B:521-545
C:521-545
D:521-545
E:521-545
F:521-545
25
25
25
25
25
25

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:172
 aligned with MPIP2_HUMAN | P30305 from UniProtKB/Swiss-Prot  Length:580

    Alignment length:172
                                   397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557  
          MPIP2_HUMAN   388 DHRELIGDYSKAFLLQTVDGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFKDELKTFRL 559
               SCOP domains d2uzqa_ A: automated matches                                                                                                                                                 SCOP domains
               CATH domains 2uzqA00 A:374-545 Oxidized Rhodanese, domain 1                                                                                                                               CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhh......................eehhhhhhhhhh......eeeeeeee..hhhhhhh.ee...ee..hhhhhhhhhhh..........eeeeeee.....hhhhhhhhhhhhhhhhh..........eeee.hhhhhhhhhh...ee........hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------K----------- SAPs(SNPs)
                    PROSITE -------------------------------------------RHODANESE_3  PDB: A:417-524 UniProt: 431-538                                                                --------------------- PROSITE
           Transcript 1 (1) Exon 1.10  Exon 1.11c           Exon 1.12b  PDB: A:406-438       Exon 1.13c  PDB: A:439-483 UniProt: 453-497  -------------------------------------Exon 1.15d  PDB: A:521-54 Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------------------------------------------------Exon 1.14  PDB: A:483-520             ------------------------- Transcript 1 (2)
                 2uzq A 374 GILELIGDYSKAFLLQTVDGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFKDELKTFRL 545
                                   383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543  

Chain B from PDB  Type:PROTEIN  Length:172
 aligned with MPIP2_HUMAN | P30305 from UniProtKB/Swiss-Prot  Length:580

    Alignment length:172
                                   397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557  
          MPIP2_HUMAN   388 DHRELIGDYSKAFLLQTVDGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFKDELKTFRL 559
               SCOP domains d2uzqb_ B: automated matches                                                                                                                                                 SCOP domains
               CATH domains 2uzqB00 B:374-545 Oxidized Rhodanese, domain 1                                                                                                                               CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhh......................eehhhhhhhhhh......eeeeeeee..hhhhhhh.ee...ee..hhhhhhhhhhh..........eeeeeee.....hhhhhhhhhhhhhhhhh.........eeeee.hhhhhhhhhh...ee........hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------K----------- SAPs(SNPs)
                    PROSITE -------------------------------------------RHODANESE_3  PDB: B:417-524 UniProt: 431-538                                                                --------------------- PROSITE
           Transcript 1 (1) Exon 1.10  Exon 1.11c           Exon 1.12b  PDB: B:406-438       Exon 1.13c  PDB: B:439-483 UniProt: 453-497  -------------------------------------Exon 1.15d  PDB: B:521-54 Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------------------------------------------------Exon 1.14  PDB: B:483-520             ------------------------- Transcript 1 (2)
                 2uzq B 374 GILELIGDYSKAFLLQTVDGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFKDELKTFRL 545
                                   383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543  

Chain C from PDB  Type:PROTEIN  Length:172
 aligned with MPIP2_HUMAN | P30305 from UniProtKB/Swiss-Prot  Length:580

    Alignment length:172
                                   397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557  
          MPIP2_HUMAN   388 DHRELIGDYSKAFLLQTVDGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFKDELKTFRL 559
               SCOP domains d2uzqc_ C: automated matches                                                                                                                                                 SCOP domains
               CATH domains 2uzqC00 C:374-545 Oxidized Rhodanese, domain 1                                                                                                                               CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhh......................eehhhhhhhhhh......eeeeeeee..hhhhhhh.ee...ee..hhhhhhhhhhh..........eeeeeee.....hhhhhhhhhhhhhhhhh..........eeee.hhhhhhhhhh...ee........hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------K----------- SAPs(SNPs)
                    PROSITE -------------------------------------------RHODANESE_3  PDB: C:417-524 UniProt: 431-538                                                                --------------------- PROSITE
           Transcript 1 (1) Exon 1.10  Exon 1.11c           Exon 1.12b  PDB: C:406-438       Exon 1.13c  PDB: C:439-483 UniProt: 453-497  -------------------------------------Exon 1.15d  PDB: C:521-54 Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------------------------------------------------Exon 1.14  PDB: C:483-520             ------------------------- Transcript 1 (2)
                 2uzq C 374 GILELIGDYSKAFLLQTVDGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFKDELKTFRL 545
                                   383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543  

Chain D from PDB  Type:PROTEIN  Length:172
 aligned with MPIP2_HUMAN | P30305 from UniProtKB/Swiss-Prot  Length:580

    Alignment length:172
                                   397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557  
          MPIP2_HUMAN   388 DHRELIGDYSKAFLLQTVDGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFKDELKTFRL 559
               SCOP domains d2uzqd_ D: automated matches                                                                                                                                                 SCOP domains
               CATH domains 2uzqD00 D:374-545 Oxidized Rhodanese, domain 1                                                                                                                               CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhh......................eehhhhhhhhhh......eeeeeeee..hhhhhhh.ee...ee..hhhhhhhhhhh..........eeeeeee.....hhhhhhhhhhhhhhhhh..........eeee.hhhhhhhhhh...ee........hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------K----------- SAPs(SNPs)
                    PROSITE -------------------------------------------RHODANESE_3  PDB: D:417-524 UniProt: 431-538                                                                --------------------- PROSITE
           Transcript 1 (1) Exon 1.10  Exon 1.11c           Exon 1.12b  PDB: D:406-438       Exon 1.13c  PDB: D:439-483 UniProt: 453-497  -------------------------------------Exon 1.15d  PDB: D:521-54 Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------------------------------------------------Exon 1.14  PDB: D:483-520             ------------------------- Transcript 1 (2)
                 2uzq D 374 GILELIGDYSKAFLLQTVDGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFKDELKTFRL 545
                                   383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543  

Chain E from PDB  Type:PROTEIN  Length:172
 aligned with MPIP2_HUMAN | P30305 from UniProtKB/Swiss-Prot  Length:580

    Alignment length:172
                                   397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557  
          MPIP2_HUMAN   388 DHRELIGDYSKAFLLQTVDGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFKDELKTFRL 559
               SCOP domains d2uzqe_ E: automated matches                                                                                                                                                 SCOP domains
               CATH domains 2uzqE00 E:374-545 Oxidized Rhodanese, domain 1                                                                                                                               CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhh......................eehhhhhhhhhh......eeeeeeee..hhhhhhh.ee...ee..hhhhhhhhhhh..........eeeeeee.....hhhhhhhhhhhhhhhhh..........eeee.hhhhhhhhhh...ee........hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------K----------- SAPs(SNPs)
                    PROSITE -------------------------------------------RHODANESE_3  PDB: E:417-524 UniProt: 431-538                                                                --------------------- PROSITE
           Transcript 1 (1) Exon 1.10  Exon 1.11c           Exon 1.12b  PDB: E:406-438       Exon 1.13c  PDB: E:439-483 UniProt: 453-497  -------------------------------------Exon 1.15d  PDB: E:521-54 Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------------------------------------------------Exon 1.14  PDB: E:483-520             ------------------------- Transcript 1 (2)
                 2uzq E 374 GILELIGDYSKAFLLQTVDGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFKDELKTFRL 545
                                   383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543  

Chain F from PDB  Type:PROTEIN  Length:172
 aligned with MPIP2_HUMAN | P30305 from UniProtKB/Swiss-Prot  Length:580

    Alignment length:172
                                   397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557  
          MPIP2_HUMAN   388 DHRELIGDYSKAFLLQTVDGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFKDELKTFRL 559
               SCOP domains d2uzqf_ F: automated matches                                                                                                                                                 SCOP domains
               CATH domains 2uzqF00 F:374-545 Oxidized Rhodanese, domain 1                                                                                                                               CATH domains
           Pfam domains (1) -------------------------------------Rhodanese-2uzqF01 F:411-518                                                                                 --------------------------- Pfam domains (1)
           Pfam domains (2) -------------------------------------Rhodanese-2uzqF02 F:411-518                                                                                 --------------------------- Pfam domains (2)
           Pfam domains (3) -------------------------------------Rhodanese-2uzqF03 F:411-518                                                                                 --------------------------- Pfam domains (3)
           Pfam domains (4) -------------------------------------Rhodanese-2uzqF04 F:411-518                                                                                 --------------------------- Pfam domains (4)
           Pfam domains (5) -------------------------------------Rhodanese-2uzqF05 F:411-518                                                                                 --------------------------- Pfam domains (5)
           Pfam domains (6) -------------------------------------Rhodanese-2uzqF06 F:411-518                                                                                 --------------------------- Pfam domains (6)
         Sec.struct. author hhhh......................eehhhhhhhhhh......eeeeeeee..hhhhhhh.ee...ee..hhhhhhhhhhh..........eeeeeee.....hhhhhhhhhhhhhhhhh..........eeee.hhhhhhhhhh...ee........hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------K----------- SAPs(SNPs)
                    PROSITE -------------------------------------------RHODANESE_3  PDB: F:417-524 UniProt: 431-538                                                                --------------------- PROSITE
           Transcript 1 (1) Exon 1.10  Exon 1.11c           Exon 1.12b  PDB: F:406-438       Exon 1.13c  PDB: F:439-483 UniProt: 453-497  -------------------------------------Exon 1.15d  PDB: F:521-54 Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------------------------------------------------Exon 1.14  PDB: F:483-520             ------------------------- Transcript 1 (2)
                 2uzq F 374 GILELIGDYSKAFLLQTVDGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFKDELKTFRL 545
                                   383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit

(-) CATH Domains  (1, 6)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 6)

Asymmetric Unit

(-) Gene Ontology  (27, 27)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (MPIP2_HUMAN | P30305)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0004721    phosphoprotein phosphatase activity    Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0019901    protein kinase binding    Interacting selectively and non-covalently with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate.
    GO:0004725    protein tyrosine phosphatase activity    Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate.
biological process
    GO:0000086    G2/M transition of mitotic cell cycle    The mitotic cell cycle transition by which a cell in G2 commits to M phase. The process begins when the kinase activity of M cyclin/CDK complex reaches a threshold high enough for the cell cycle to proceed. This is accomplished by activating a positive feedback loop that results in the accumulation of unphosphorylated and active M cyclin/CDK complex.
    GO:0007049    cell cycle    The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
    GO:0051301    cell division    The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
    GO:0007144    female meiosis I    The cell cycle process in which the first meiotic division occurs in the female germline.
    GO:0000278    mitotic cell cycle    Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent.
    GO:0001556    oocyte maturation    A developmental process, independent of morphogenetic (shape) change, that is required for an oocyte to attain its fully functional state. Oocyte maturation commences after reinitiation of meiosis commonly starting with germinal vesicle breakdown, and continues up to the second meiotic arrest prior to fertilization.
    GO:0035335    peptidyl-tyrosine dephosphorylation    The removal of phosphoric residues from peptidyl-O-phospho-tyrosine to form peptidyl-tyrosine.
    GO:0008284    positive regulation of cell proliferation    Any process that activates or increases the rate or extent of cell proliferation.
    GO:0032467    positive regulation of cytokinesis    Any process that activates or increases the frequency, rate or extent of the division of the cytoplasm of a cell, and its separation into two daughter cells.
    GO:0045931    positive regulation of mitotic cell cycle    Any process that activates or increases the rate or extent of progression through the mitotic cell cycle.
    GO:0045860    positive regulation of protein kinase activity    Any process that activates or increases the frequency, rate or extent of protein kinase activity.
    GO:0006470    protein dephosphorylation    The process of removing one or more phosphoric residues from a protein.
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.
cellular component
    GO:0005813    centrosome    A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0005815    microtubule organizing center    An intracellular structure that can catalyze gamma-tubulin-dependent microtubule nucleation and that can anchor microtubules by interacting with their minus ends, plus ends or sides.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0000922    spindle pole    Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    PO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Glu A:524 - Pro A:525   [ RasMol ]  
    Glu B:524 - Pro B:525   [ RasMol ]  
    Glu C:524 - Pro C:525   [ RasMol ]  
    Glu D:524 - Pro D:525   [ RasMol ]  
    Glu E:524 - Pro E:525   [ RasMol ]  
    Glu F:524 - Pro F:525   [ RasMol ]  
    Tyr C:497 - Pro C:498   [ RasMol ]  
    Tyr D:497 - Pro D:498   [ RasMol ]  
    Tyr E:497 - Pro E:498   [ RasMol ]  
    Tyr F:497 - Pro F:498   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2uzq
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  MPIP2_HUMAN | P30305
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  3.1.3.48
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  MPIP2_HUMAN | P30305
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MPIP2_HUMAN | P303051cwr 1cws 1cwt 1qb0 1ym9 1ymd 1ymk 1yml 1ys0 2a2k 2ifd 2ifv 3fqt 3fqu 4wh7 4wh9

(-) Related Entries Specified in the PDB File

1cwr HUMAN CDC25B CATALYTIC DOMAIN WITHOUT ION IN CATALYTIC SITE
1cws HUMAN CDC25B CATALYTIC DOMAIN WITH TUNGSTATE
1cwt HUMAN CDC25B CATALYTIC DOMAIN WITH METHYL_MERCURY
1qb0 HUMAN CDC25B CATALYTIC DOMAIN
1ym9 CRYSTAL STRUCTURE OF THE CDC25B PHOSPHATASE CATALYTICDOMAIN WITH THE ACTIVE SITE CYSTEINE IN THE SULFINIC FORM
1ymd CRYSTAL STRUCTURE OF THE CDC25B PHOSPHATASE CATALYTICDOMAIN WITH THE ACTIVE SITE CYSTEINE IN THE SULFONIC FORM
1ymk CRYSTAL STRUCTURE OF THE CDC25B PHOSPHATASE CATALYTICDOMAIN IN THE APO FORM
1yml CRYSTAL STRUCTURE OF THE CDC25B PHOSPHATASE CATALYTICDOMAIN WITH THE ACTIVE SITE CYSTEINE IN THE SULFENIC FORM
1ys0 CRYSTAL STRUCTURE OF THE CDC25B PHOSPHATASE CATALYTICDOMAIN WITH THE ACTIVE SITE CYSTEINE IN THE DISULFIDE FORM
2a2k CRYSTAL STRUCTURE OF AN ACTIVE SITE MUTANT , C473S, OFCDC25B PHOSPHATASE CATALYTIC DOMAIN