4WFL - JenaLib

Title :   STRUCTURE OF THE COMPLETE BACTERIAL SRP ALU DOMAIN

Authors :   G. Kempf, K. Wild, I. Sinning

Date :   15 Sep 14 (Deposition) - 15 Oct 14 (Release) - 19 Nov 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.49

Chains :   Asym./Biol. Unit : A

Keywords :   Non-Coding, Rna, Srp Rna, Elongation Arrest (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   G. Kempf, K. Wild, I. Sinning
Structure Of The Complete Bacterial Srp Alu Domain.
Nucleic Acids Res. V. 42 12284 2014
PubMed-ID: 25270875 | Reference-DOI: 10.1093/NAR/GKU883

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 20)

Sites (18, 18)

Asymmetric Unit (18, 18)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GTP A:3 , HOH A:301 , HOH A:305 , HOH A:308	binding site for residue MG A 201
02	AC2	SOFTWARE	G A:14 , C A:15 , G A:16 , C A:67 , C A:68	binding site for residue NCO A 202
03	AC3	SOFTWARE	G A:19 , A A:20 , G A:21 , G A:22 , HOH A:335	binding site for residue NCO A 203
04	AC4	SOFTWARE	HOH A:309 , HOH A:310 , HOH A:311 , HOH A:312 , HOH A:313 , HOH A:314	binding site for residue MG A 204
05	AC5	SOFTWARE	G A:17 , G A:18 , G A:28 , U A:29	binding site for residue NCO A 205
06	AC6	SOFTWARE	G A:57 , G A:58 , HOH A:342	binding site for residue NCO A 206
07	AC7	SOFTWARE	G A:27 , A A:53 , G A:54	binding site for residue NCO A 207
08	AC8	SOFTWARE	G A:81 , G A:82 , HOH A:345	binding site for residue NCO A 208
09	AC9	SOFTWARE	GTP A:3 , C A:5 , A A:24 , C A:105 , G A:106 , G A:107 , U A:108 , HOH A:302	binding site for residue NCO A 209
10	AD1	SOFTWARE	HOH A:315 , HOH A:316 , HOH A:317 , HOH A:318 , HOH A:319 , HOH A:320	binding site for residue MG A 210
11	AD2	SOFTWARE	U A:65 , C A:66 , A A:97 , U A:108 , CCC A:109	binding site for residue NCO A 211
12	AD3	SOFTWARE	GTP A:3 , C A:47 , C A:103	binding site for residue NCO A 212
13	AD4	SOFTWARE	C A:73 , G A:74 , G A:92 , HOH A:326	binding site for residue NCO A 213
14	AD5	SOFTWARE	G A:35 , C A:51 , U A:52 , C A:94 , A A:95 , HOH A:304	binding site for residue NCO A 214
15	AD6	SOFTWARE	A A:64 , G A:100 , U A:101 , HOH A:343	binding site for residue NCO A 215
16	AD7	SOFTWARE	G A:28 , U A:29 , U A:40 , G A:41 , C A:42 , G A:54 , HOH A:336	binding site for residue NCO A 216
17	AD8	SOFTWARE	G A:21 , U A:23 , HOH A:335	binding site for residue NCO A 217
18	AD9	SOFTWARE	C A:10 , U A:11 , C A:61 , G A:62	binding site for residue NCO A 218

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

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Chain A from PDB  Type:RNA  Length:107
                                                                                                                                           
                 4wfl A   3 uGCCGUGCUAAGCGGGGAGGUAGCGGUGCCCUGUACCUGCAAUCCGCUCUAGCAGGGCCGAAUCCCUUCUCGAGGUUCGGUAACGAAUCGACAGAAGGUGCACGGUx 109
                            |       12        22        32        42        52        62        72        82        92       102      |
                            |                                                                                                       109-CCC
                            3-GTP

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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