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Asym. Unit
Info
Asym.Unit (104 KB)
Biol.Unit 1 (98 KB)
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(1)
Title
:
STRUCTURE OF THE COMPLETE BACTERIAL SRP ALU DOMAIN
Authors
:
G. Kempf, K. Wild, I. Sinning
Date
:
15 Sep 14 (Deposition) - 15 Oct 14 (Release) - 19 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.49
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Non-Coding, Rna, Srp Rna, Elongation Arrest
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
G. Kempf, K. Wild, I. Sinning
Structure Of The Complete Bacterial Srp Alu Domain.
Nucleic Acids Res. V. 42 12284 2014
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Hetero Components
(4, 20)
Info
All Hetero Components
1a: CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC... (CCCa)
2a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
4a: COBALT HEXAMMINE(III) (NCOa)
4b: COBALT HEXAMMINE(III) (NCOb)
4c: COBALT HEXAMMINE(III) (NCOc)
4d: COBALT HEXAMMINE(III) (NCOd)
4e: COBALT HEXAMMINE(III) (NCOe)
4f: COBALT HEXAMMINE(III) (NCOf)
4g: COBALT HEXAMMINE(III) (NCOg)
4h: COBALT HEXAMMINE(III) (NCOh)
4i: COBALT HEXAMMINE(III) (NCOi)
4j: COBALT HEXAMMINE(III) (NCOj)
4k: COBALT HEXAMMINE(III) (NCOk)
4l: COBALT HEXAMMINE(III) (NCOl)
4m: COBALT HEXAMMINE(III) (NCOm)
4n: COBALT HEXAMMINE(III) (NCOn)
4o: COBALT HEXAMMINE(III) (NCOo)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CCC
1
Mod. Nucleotide
CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE
2
GTP
1
Mod. Nucleotide
GUANOSINE-5'-TRIPHOSPHATE
3
MG
3
Ligand/Ion
MAGNESIUM ION
4
NCO
15
Ligand/Ion
COBALT HEXAMMINE(III)
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GTP A:3 , HOH A:301 , HOH A:305 , HOH A:308
binding site for residue MG A 201
02
AC2
SOFTWARE
G A:14 , C A:15 , G A:16 , C A:67 , C A:68
binding site for residue NCO A 202
03
AC3
SOFTWARE
G A:19 , A A:20 , G A:21 , G A:22 , HOH A:335
binding site for residue NCO A 203
04
AC4
SOFTWARE
HOH A:309 , HOH A:310 , HOH A:311 , HOH A:312 , HOH A:313 , HOH A:314
binding site for residue MG A 204
05
AC5
SOFTWARE
G A:17 , G A:18 , G A:28 , U A:29
binding site for residue NCO A 205
06
AC6
SOFTWARE
G A:57 , G A:58 , HOH A:342
binding site for residue NCO A 206
07
AC7
SOFTWARE
G A:27 , A A:53 , G A:54
binding site for residue NCO A 207
08
AC8
SOFTWARE
G A:81 , G A:82 , HOH A:345
binding site for residue NCO A 208
09
AC9
SOFTWARE
GTP A:3 , C A:5 , A A:24 , C A:105 , G A:106 , G A:107 , U A:108 , HOH A:302
binding site for residue NCO A 209
10
AD1
SOFTWARE
HOH A:315 , HOH A:316 , HOH A:317 , HOH A:318 , HOH A:319 , HOH A:320
binding site for residue MG A 210
11
AD2
SOFTWARE
U A:65 , C A:66 , A A:97 , U A:108 , CCC A:109
binding site for residue NCO A 211
12
AD3
SOFTWARE
GTP A:3 , C A:47 , C A:103
binding site for residue NCO A 212
13
AD4
SOFTWARE
C A:73 , G A:74 , G A:92 , HOH A:326
binding site for residue NCO A 213
14
AD5
SOFTWARE
G A:35 , C A:51 , U A:52 , C A:94 , A A:95 , HOH A:304
binding site for residue NCO A 214
15
AD6
SOFTWARE
A A:64 , G A:100 , U A:101 , HOH A:343
binding site for residue NCO A 215
16
AD7
SOFTWARE
G A:28 , U A:29 , U A:40 , G A:41 , C A:42 , G A:54 , HOH A:336
binding site for residue NCO A 216
17
AD8
SOFTWARE
G A:21 , U A:23 , HOH A:335
binding site for residue NCO A 217
18
AD9
SOFTWARE
C A:10 , U A:11 , C A:61 , G A:62
binding site for residue NCO A 218
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (104 KB)
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