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(-) Description

Title :  STRUCTURE OF TRNA-PROCESSING ENZYME COMPLEX 1
 
Authors :  S. Yamashita, K. Tomita
Date :  04 Sep 14  (Deposition) - 15 Apr 15  (Release) - 27 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Rna Nucleotidyltransferase, Cca-Adding Enzyme, A-Adding Enzyme (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Yamashita, A. Martinez, K. Tomita
Measurement Of Acceptor-T Psi C Helix Length Of Trna For Terminal A76-Addition By A-Adding Enzyme.
Structure V. 23 830 2015
PubMed-ID: 25914059  |  Reference-DOI: 10.1016/J.STR.2015.03.013

(-) Compounds

Molecule 1 - POLY A POLYMERASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET22B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 443-824
    Gene: PCNB1, AQ_411
    Organism Scientific: AQUIFEX AEOLICUS
    Organism Taxid: 224324
    Strain: VF5
    Synonym: A-ADDING ENZYME
 
Molecule 2 - RNA 76-MER
    Chains: B
    Engineered: YES
    Organism Scientific: THERMOTOGA MARITIMA MSB8
    Organism Taxid: 243274
    Other Details: TRNAPHE FROM THERMOTOGA MARITIMA
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4WC3)

(-) Sites  (0, 0)

(no "Site" information available for 4WC3)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WC3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WC3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WC3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WC3)

(-) Exons   (0, 0)

(no "Exon" information available for 4WC3)

(-) Sequences/Alignments

Asymmetric/Biological Unit
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Chain A from PDB  Type:PROTEIN  Length:367
                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh.eeeeehhhhhhhhh.....eeeeeee.hhhhhhhhhhhhhh..eeee....eeeeee..eeeeeee........hhhhhhhh..hhhhh.eee........ee...hhhhhhhh.ee.....hhhhhh.hhhhhhhhhhhhh..eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.hhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh..hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh..hhhhhhhhh.hhhhhhhhhhhhhh......hhhhhhhhh..hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wc3 A   1 MVGQIAKEMGLRAYIVGGVVRDILLGKEVWDVDFVVEGNAIELAKELARRHGVNVHPFPEFGTAHLKIGKLKLEFATARRETEPASLKEDLIRRDFTINAMAISVNLEDYGTLIDYFGGLRDLKDKVIRVLHPVSFIEDPVRILRALRFAGRLNFKLSRSTEKLLKQAVNLGLLKEAPRGRLINEIKLALREDRFLEILELYRKYRVLEEIIEGFQWNEKVLQKLYALRKVVDWHALEFSEERIDYGWLYLLILISNLDYERGKHFLEEMSAPSWVRETYKFMKFKLGSLKEELKKAKENYEVYRLLKPLHTSVLLLLMLEEELKEKIKLYLEKLRKVKLPKEKIEELKKGKELGERIEELKREIMN 381
                                    10        20        30        40        50        60        70        80 ||    100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360|      374       
                                                                                                            82|                                                                                                                                                                                                                                                                        360|                
                                                                                                             93                                                                                                                                                                                                                                                                         365                


Chain B from PDB  Type:RNA  Length:76
                                                                                                            
                 4wc3 B   1 GGCCAGGUAGCUCAGUUGGUAGAGCACUGGACUGAAAAUCCAGGUGUCGGCGGUUCGAUUCCGCCCCUGGCCACCA  76
                                    10        20        30        40        50        60        70
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WC3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WC3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WC3)

(-) Gene Ontology  (7, 7)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        O66728_AQUAE | O66728: 1vfg 4wby 4wbz 4wc0 4wc1 4wc2 4wc4 4wc5 4wc6 4wc7 4x0a 4x0b

(-) Related Entries Specified in the PDB File

1vfg SAME PROTEIN COMPLEXED WITH DIFFERENT TRNA AND ATP ANALOG
4wby
4wbz
4wc0
4wc1
4wc2
4wc4
4wc5
4wc6
4wc7