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(-) Description

Title :  ASSEMBLY PRINCIPLES OF THE UNIQUE CAGE FORMED BY THE ATPASE RAVA HEXAMER AND THE LYSINE DECARBOXYLASE LDCI DECAMER
 
Authors :  H. Malet, K. Liu, M. El Bakkouri, S. W. S. Chan, G. Effantin, M. Bacia, W. I. Gutsche
Date :  16 Jun 14  (Deposition) - 20 Aug 14  (Release) - 10 Sep 14  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  7.50
Chains :  Asym./Biol. Unit :  A,D
Keywords :  Lyase-Hydrolase Complex, Lysine Decarboxylase, Aaa+ Atpase, Acid Stress Response (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Malet, K. Liu, M. El Bakkouri, S. W. S. Chan, G. Effantin, M. Bacia, W. A. Houry, I. Gutsche
Assembly Principles Of A Unique Cage Formed By Hexameric And Decameric E. Coli Proteins.
Elife V. 3E03653 2014
PubMed-ID: 25097238  |  Reference-DOI: 10.7554/ELIFE.03653

(-) Compounds

Molecule 1 - LYSINE DECARBOXYLASE, INDUCIBLE
    Chains: A
    EC Number: 4.1.1.18
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Variant: CF1693 SOURCE 7
    Expression System Vector: PET22B
    Expression System Vector Type: PLASMID
    Organism Scientific: ESCHERICHIA COLI STR. K-12 SUBSTR. MG1655
    Organism Taxid: 511145
    Synonym: LDC, INDUCIBLE LYSINE DECARBOXYLASE
 
Molecule 2 - ATPASE RAVA
    Chains: D
    EC Number: 3.6.3.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: GOLD PLYSS
    Expression System Vector: P11
    Expression System Vector Type: PLASMID
    Fragment: LARA DOMAIN RESIDUES 329-440
    Organism Scientific: ESCHERICHIA COLI STR. K-12 SUBSTR. MG1655
    Organism Taxid: 511145
    Synonym: REGULATORY ATPASE VARIANT A

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4UPF)

(-) Sites  (0, 0)

(no "Site" information available for 4UPF)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UPF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4UPF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UPF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UPF)

(-) Exons   (0, 0)

(no "Exon" information available for 4UPF)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:710
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4upf A   1 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENNARLCGVIFDWDKYNLELCEEISKMNENLPLYAFANTYSTLDVSLNDLRLQISFFEYALGAAEDIANKIKQTTDEYINTILPPLTKALFKYVREGKYTFCTPGHMGGTAFQKSPVGSLFYDFFGPNTMKSDISISVSELGSLLDHSGPHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVKSIHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHLLAAFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFKRAFDLNLRVKNMLPSLYREDPEFYENMRIQELAQNIHKLIVHHNLPDLMYRAFEVLPTMVMTPYAAFQKELHGMTEEVYLDEMVGRINANMILPYPPGVPLVMPGEMITEESRPVLEFLQMLCEIGAHYPGFETDIHGAYRQADGRYTVKVLKE 711
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                                                                                                                                                                                                                                                                                                                                                                                                       366|                                                                                                                                                                                                                                                                                                                                                       
                                                                                                                                                                                                                                                                                                                                                                                                        368                                                                                                                                                                                                                                                                                                                                                       


Chain D from PDB  Type:PROTEIN  Length:74
                                                                                                          
               SCOP domains -------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......................................................................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------- Transcript
                 4upf D 361 TLTLLLQKPLKLHDMEVVHISFERSALEQWLSKGGEIRGKLNGIGFAQKLNLEVDSAQHLVVRDVSLQGSTLAL 434
                                   370       380       390       400       410       420       430
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UPF)

(-) CATH Domains  (0, 0)

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(-) Gene Ontology  (16, 19)

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  RAVA_ECOLI | P31473
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LDCI_ECOLI | P0A9H3: 3n75 3q16 4upb 5fkx 5fl2
        RAVA_ECOLI | P31473: 3nbx 4upb 5fl2

(-) Related Entries Specified in the PDB File

4upb ELECTRON CRYO-MICROSCOPY OF THE COMPLEX FORMED BETWEEN THE HEXAMERIC ATPASE RAVA AND THE DECAMERIC INDUCIBLE DECARBOXYLASE LDCI RELATED ID: EMD-2681 RELATED DB: EMDB