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(-) Description

Title :  CRYSTAL STRUCTURE OF 3P IN COMPLEX WITH TAFCPB
 
Authors :  N. Halland, M. Broenstrup, J. Czech, W. Czechtizky, A. Evers, M. Follma M. Kohlmann, M. Schiell, M. Kurz, H. A. Schreuder, C. Kallus
Date :  27 Mar 15  (Deposition) - 03 Jun 15  (Release) - 26 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.94
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase, Tafi, Thrombosis, Fibrinolysis, Drug Discovery (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Halland, M. Bronstrup, J. Czech, W. Czechtizky, A. Evers, M. Follmann, M. Kohlmann, M. Schiell, M. Kurz, H. A. Schreuder, C. Kallus
Novel Small Molecule Inhibitors Of Activated Thrombin Activatable Fibrinolysis Inhibitor (Tafia) From Natural Product Anabaenopeptin.
J. Med. Chem. V. 58 4839 2015
PubMed-ID: 25990761  |  Reference-DOI: 10.1021/JM501840B

(-) Compounds

Molecule 1 - CARBOXYPEPTIDASE B
    Chains: A
    EC Number: 3.4.17.2
    Engineered: YES
    Expression System: PICHIA PASTORIS
    Expression System Strain: GS115
    Expression System Taxid: 644223
    Fragment: CATALYTIC DOMAIN, RESIDUES 111-416
    Mutation: YES
    Organism Common: PIG
    Organism Scientific: SUS SCROFA
    Organism Taxid: 9823
    Other Details: CONTAINS CATALYTIC ZINC ION.
    Synonym: TAFCPB

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 9)

Asymmetric/Biological Unit (4, 9)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2GOL4Ligand/IonGLYCEROL
3GWX1Ligand/Ion(2S)-6-AMINO-2-[[(1R)-1-(CYCLOHEXYLMETHYL)-2-OXO-2-[[(2S)-1,7,7-TRIMETHYLNORBORNAN-2-YL]AMINO]ETHYL]ARBAMOYLAMINO]HEXANOIC ACID
4ZN3Ligand/IonZINC ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:69 , GLU A:72 , HIS A:196 , GWX A:1318BINDING SITE FOR RESIDUE ZN A1310
2AC2SOFTWAREGLU A:85 , ASP A:159 , ASP A:162 , GLU A:291 , HOH A:2183BINDING SITE FOR RESIDUE ZN A1311
3AC3SOFTWAREHIS A:307 , HOH A:2451BINDING SITE FOR RESIDUE ZN A1312
4AC4SOFTWAREASN A:58 , PRO A:60 , SER A:188 , LYS A:190BINDING SITE FOR RESIDUE ACT A1313
5AC5SOFTWARESER A:94 , THR A:97 , GLU A:98 , ASN A:101 , TYR A:210 , THR A:245 , LEU A:247 , HOH A:2457BINDING SITE FOR RESIDUE GOL A1314
6AC6SOFTWARELEU A:187 , SER A:188 , ILE A:189 , LYS A:190 , GLY A:262 , ILE A:263 , TYR A:309BINDING SITE FOR RESIDUE GOL A1315
7AC7SOFTWARELYS A:51 , TYR A:106 , ASN A:186 , HOH A:2459BINDING SITE FOR RESIDUE GOL A1316
8AC8SOFTWARETYR A:90 , TYR A:204 , LEU A:212 , ASN A:216 , PRO A:242 , HOH A:2342 , HOH A:2396 , HOH A:2461BINDING SITE FOR RESIDUE GOL A1317
9AC9SOFTWAREHIS A:69 , ARG A:71 , GLU A:72 , ARG A:127 , ASN A:144 , ARG A:145 , GLU A:163 , TYR A:198 , SER A:207 , THR A:232 , TYR A:248 , ASP A:255 , GLU A:270 , PHE A:279 , ZN A:1310 , HOH A:2153 , HOH A:2268 , HOH A:2270BINDING SITE FOR RESIDUE GWX A1318

(-) SS Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1A:66 -A:79
2A:138 -A:161
3A:152 -A:166

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Ser A:197 -Tyr A:198
2Pro A:205 -Tyr A:206
3Arg A:272 -Asp A:273

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UIB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UIB)

(-) Exons   (0, 0)

(no "Exon" information available for 4UIB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:305
                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhh...eeeeeeee.....eeeeeee........eeeee......hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhheeeee...hhhhhhhhhhh...................hhhhh..........................hhhhhhhhhhhhhh...eeeeeeee....eeee..........hhhhhhhhhhhhhhhhhh......eeeehhhhh.....hhhhhhhhh...eeeeee...........hhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4uib A    6 GHSYEKYNNWETIEAWTKQVTSENPDLISRTAIGTTFLGNNIYLLKVGKPGPNKPAIFMDCGIHAREWISHAFCQWFVREAVLTYGYESHMTEFLNKLDFYVLPVLNIDGYIYTWTKNRMWRKTRSTNAGTTCIGTDPNRNFDAGWCTTGASTDPCDETYCGSAAESEKETKALADFIRNNLSSIKAYLSIHSYSQHIVYPYSYDYKLPENNAELNNLAKAAVKELATLYGTKYTYGPGATTLYLAPGGGDDWAYDQGIKYSFTFELRDKGRYGFILPESQIQATCEETMLAIKYVTNYVLGHLY  309
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185   |   194       204       214       224       234       244       254       264       274       284       294       304     
                                                                                                                                                                                                                188A
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UIB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UIB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UIB)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Arg A:272 - Asp A:273   [ RasMol ]  
    Pro A:205 - Tyr A:206   [ RasMol ]  
    Ser A:197 - Tyr A:198   [ RasMol ]  
 

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  3.4.17.2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CBPB1_PIG | P09955: 1nsa 1pba 1z5r 1zg7 1zg8 1zg9 2jew 2piy 2piz 2pj0 2pj1 2pj2 2pj3 2pj4 2pj5 2pj6 2pj7 2pj8 2pj9 2pja 2pjb 2pjc 3glj 3wab 3wc5 3wc6 3wc7 4uia 4z65 5j1q 5jc6 5lrg 5lrj 5lrk 5lyd 5lyf 5lyi 5lyl

(-) Related Entries Specified in the PDB File

4uia CRYSTAL STRUCTURE OF 3A IN COMPLEX WITH TAFCPB