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(-) Description

Title :  CARBOXYPEPTIDASE B WITH 2-ND ZINC AND ACETATE ION
 
Authors :  V. I. Timofeev, V. K. Akparov, I. P. Kuranova
Date :  14 Apr 16  (Deposition) - 24 May 17  (Release) - 24 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. I. Timofeev, V. K. Akparov, I. P. Kuranova
Carboxypeptidase B With 2-Nd Zinc And Acetate Ion
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CARBOXYPEPTIDASE B
    Chains: A
    EC Number: 3.4.17.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: CPB1, CPB
    Organism Common: PIG
    Organism Scientific: SUS SCROFA
    Organism Taxid: 9823

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric/Biological Unit (2, 6)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2ZN5Ligand/IonZINC ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:69 , GLU A:72 , HIS A:196 , ZN A:402 , ACT A:406 , HOH A:549binding site for residue ZN A 401
2AC2SOFTWAREGLU A:270 , ZN A:401 , ACT A:406 , HOH A:549binding site for residue ZN A 402
3AC3SOFTWAREGLU A:85 , ASP A:159 , ASP A:162 , GLU A:291 , HOH A:526binding site for residue ZN A 403
4AC4SOFTWAREGLU A:19 , HOH A:628 , HOH A:630binding site for residue ZN A 404
5AC5SOFTWAREHIS A:7binding site for residue ZN A 405
6AC6SOFTWAREHIS A:69 , ASN A:144 , ARG A:145 , GLU A:270 , ZN A:401 , ZN A:402 , HOH A:513 , HOH A:549binding site for residue ACT A 406

(-) SS Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1A:66 -A:79
2A:138 -A:161
3A:152 -A:166

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Ser A:197 -Tyr A:198
2Pro A:205 -Tyr A:206
3Arg A:272 -Asp A:273

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JC6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JC6)

(-) Exons   (0, 0)

(no "Exon" information available for 5JC6)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:304
                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhh...eeeeeeee.....eeeeeee........eeeeee.....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhheeeee...hhhhhhhhhhh...................hhhhh..........................hhhhhhhhhhhhhh...eeeeeeee....eeee..........hhhhhhhhhhhhhhhhhh......eeeehhhhh.....hhhhhhhhh...eeeeee...........hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5jc6 A    6 GHSYEKYNNWETIEAWTKQVTSENPDLISRTAIGTTFLGNNIYLLKVGKPGPNKPAIFMDCGFHAREWISHAFCQWFVREAVLTYGYESHMTEFLNKLDFYVLPVLNIDGYIYTWTKNRMWRKTRSTNAGTTCIGTDPNRNFDAGWCTTGASTDPCDETYCGSAAESEKETKALADFIRNNLSSIKAYLTIHSYSQMILYPYSYDYKLPENNAELNNLAKAAVKELATLYGTKYTYGPGATTIYPAAGGSDDWAYDQGIKYSFTFELRDKGRYGFILPESQIQATCEETMLAIKYVTNYVLGHL  308
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185  |    194       204       214       224       234       244       254       264       274       284       294       304    
                                                                                                                                                                                                               187A
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JC6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JC6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JC6)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Arg A:272 - Asp A:273   [ RasMol ]  
    Pro A:205 - Tyr A:206   [ RasMol ]  
    Ser A:197 - Tyr A:198   [ RasMol ]  
 

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  5jc6
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  CBPB1_PIG | P09955
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  3.4.17.2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CBPB1_PIG | P09955: 1nsa 1pba 1z5r 1zg7 1zg8 1zg9 2jew 2piy 2piz 2pj0 2pj1 2pj2 2pj3 2pj4 2pj5 2pj6 2pj7 2pj8 2pj9 2pja 2pjb 2pjc 3glj 3wab 3wc5 3wc6 3wc7 4uia 4uib 4z65 5j1q 5lrg 5lrj 5lrk 5lyd 5lyf 5lyi 5lyl

(-) Related Entries Specified in the PDB File

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