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(-) Description

Title :  STRUCTURE OF THE VIM-2 METALLO-BETA-LACTAMASE IN COMPLEX WITH A BISTHIAZOLIDINE INHIBITOR
 
Authors :  J. Spencer
Date :  08 Aug 14  (Deposition) - 17 Sep 14  (Release) - 17 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.25
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Hydrolase Metallo-Beta-Lactamase Complex, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Spencer
Structure Of The Vim-2 Metallo-Beta-Lactamase In Complex With A Bisthiazolidine Inhibitor
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BETA-LACTAMASE CLASS B VIM-2
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: POPINF
    Expression System Strain: PLYSS
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287
    Synonym: CLASS B BETA-LACTAMASE,METALLO BETA-LACTAMASE,METALLO-BETA- LACTAMASE,METALLO-BETA-LACTAMASE VIM-2,METTALO-BETA-LACTAMASE VIM-2, VIM-2,VIM-2 CLASS B METALLO B-LACTAMASE,VIM-2 PROTEIN,VIM-2 TYPE METALLO-BETA-LACTAMASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 11)

Asymmetric Unit (3, 11)
No.NameCountTypeFull Name
13C73Ligand/Ion(3R,5R,7AS)-5-(SULFANYLMETHYL)TETRAHYDRO[1,3]THIAZOLO[4,3-B][1,3]THIAZOLE-3-CARBOXYLIC ACID
2GOL4Ligand/IonGLYCEROL
3ZN4Ligand/IonZINC ION
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
13C72Ligand/Ion(3R,5R,7AS)-5-(SULFANYLMETHYL)TETRAHYDRO[1,3]THIAZOLO[4,3-B][1,3]THIAZOLE-3-CARBOXYLIC ACID
2GOL1Ligand/IonGLYCEROL
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
13C71Ligand/Ion(3R,5R,7AS)-5-(SULFANYLMETHYL)TETRAHYDRO[1,3]THIAZOLO[4,3-B][1,3]THIAZOLE-3-CARBOXYLIC ACID
2GOL3Ligand/IonGLYCEROL
3ZN-1Ligand/IonZINC ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:112 , HIS A:114 , HIS A:177 , ZN A:302 , HOH A:468binding site for residue ZN A 301
02AC2SOFTWAREASP A:116 , CYS A:196 , HIS A:238 , ZN A:301 , HOH A:468binding site for residue ZN A 302
03AC3SOFTWARESER A:178 , THR A:179 , ASP A:211 , HOH A:478 , HOH A:491 , PRO B:135 , ARG B:138 , SER B:152 , GLU B:154binding site for residue GOL A 303
04AC4SOFTWAREPHE A:60 , TYR A:65 , HIS A:177 , TYR A:199 , ARG A:203 , ASN A:208 , HIS A:238 , 3C7 A:305 , HOH A:473 , HOH A:475binding site for residue 3C7 A 304
05AC5SOFTWAREHIS A:114 , ASP A:115 , ASP A:116 , GLU A:144 , ASN A:146 , ASN A:208 , 3C7 A:304 , HOH A:533 , HOH A:570 , ARG B:139binding site for residue 3C7 A 305
06AC6SOFTWAREPHE B:60 , TYR B:65 , TRP B:85 , HIS B:114 , ASP B:116 , HIS B:177 , ARG B:203 , ASN B:208 , HIS B:238 , ZN B:302 , ZN B:303 , HOH B:462 , HOH B:482binding site for residue 3C7 B 301
07AC7SOFTWAREASP B:116 , CYS B:196 , HIS B:238 , 3C7 B:301binding site for residue ZN B 302
08AC8SOFTWAREHIS B:112 , HIS B:114 , HIS B:177 , 3C7 B:301binding site for residue ZN B 303
09AC9SOFTWARESER B:35 , ILE B:37 , PRO B:38 , VAL B:39 , VAL B:64binding site for residue GOL B 304
10AD1SOFTWAREVAL A:143 , GLU A:144 , HOH A:490 , PRO B:135 , SER B:136 , ARG B:139 , HOH B:498 , HOH B:509 , HOH B:513binding site for residue GOL B 305
11AD2SOFTWAREASP B:49 , ARG B:73 , SER B:188binding site for residue GOL B 306

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:304 -A:305

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4UA4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UA4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UA4)

(-) Exons   (0, 0)

(no "Exon" information available for 4UA4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:230
                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhh.....eeeeee..eeeeeeeeee..eeeeeeeeeeee..eeeee....hhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhh..eeeehhhhhhhhhhhh.....ee........eeeee..eeeee..........eeee....eeeeehhh.................hhhhhhhhhhhhh....eeee.......hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ua4 A  28 SGEYPTVSEIPVGEVRLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAAGVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSASVLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGHGLPGGLDLLKHTTNVVKAH 257
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257


Chain B from PDB  Type:PROTEIN  Length:234
                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhh.....eeeeee..eeeeeeeeee..eeeeeeeeeeee..eeeee....hhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhh..eeeehhhhhhhhhhhh.....ee.........eeee..eeee...........eeeehhh.eeeeehhh.................hhhhhhhhhhhhh....eeee.......hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ua4 B  30 EYPTVSEIPVGEVRLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAAGVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSASVLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGHGLPGGLDLLKHTTNVVKAHTNRSVV 263
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UA4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UA4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UA4)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)

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        Q9K2N0_PSEAI | Q9K2N0: 5k48 5n4s 5n4t 5nhz 5ni0
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        Q9K2N0_PSEAI | Q9K2N0: 1ko2 1ko3 4bz3 4c1d 4c1e 4nq2 4pvo 4pvt 5acu 5acv 5acw 5acx 5fqc 5lca 5lcf 5lch 5le1 5lm6

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