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(-) Description

Title :  HUMAN EPHA3 KINASE DOMAIN IN COMPLEX WITH COMPOUND 164
 
Authors :  J. Dong, A. Caflisch
Date :  01 Jul 14  (Deposition) - 13 May 15  (Release) - 13 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase/Transferase Inhibitor, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Dong, H. Zhao, T. Zhou, D. Spiliotopoulos, C. Rajendran, X. D. Li, D. Huang, A. Caflisch
Structural Analysis Of The Binding Of Type I, I1/2, And Ii Inhibitors To Eph Tyrosine Kinases.
Acs Med. Chem. Lett. V. 6 79 2015
PubMed-ID: 25589935  |  Reference-DOI: 10.1021/ML500355X

(-) Compounds

Molecule 1 - EPHRIN TYPE-A RECEPTOR 3
    Chains: A
    EC Number: 2.7.10.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: P28-LIC-THROMBIN
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: KINASE DOMAIN (UNP RESIDUES 609-947)
    Gene: EPHA3, ETK, ETK1, HEK, TYRO4
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: EPH-LIKE KINASE 4,HEK4,HEK,HUMAN EMBRYO KINASE,TYROSINE- PROTEIN KINASE TYRO4,TYROSINE-PROTEIN KINASE RECEPTOR ETK1,EPH-LIKE TYROSINE KINASE 1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
137W1Ligand/Ion5-{[3-CARBAMOYL-4-(3,4-DIMETHYLPHENYL)-5-METHYLTHIOPHEN-2-YL]AMINO}-5-OXOPENTANOIC ACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:625 , VAL A:627 , ALA A:651 , LYS A:653 , ILE A:697 , THR A:699 , GLU A:700 , TYR A:701 , MET A:702 , GLU A:703 , LEU A:753binding site for residue 37W A 1001

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4TWO)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Lys A:693 -Pro A:694

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4TWO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4TWO)

(-) Exons   (0, 0)

(no "Exon" information available for 4TWO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:278
                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhh.eeeeeeeee....eeeeeeee.....eeeeeeee.....hhhhhhhhhhhhhhhh.........eeeee......eeeee.....hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee.hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh.ee.......hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhh.hhhhh......ee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4two A 609 VHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRNPGSLKIITPSNLLLDQS 906
                                   618       628       638       648       658       668       678       688       698       708       718       728       738       748       758       768  ||   793       803       813       823       833       843       853       863       873       883       898        
                                                                                                                                                                                            771|                                                                                                      892|        
                                                                                                                                                                                             787                                                                                                       898
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4TWO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4TWO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4TWO)

(-) Gene Ontology  (32, 32)

Asymmetric/Biological Unit(hide GO term definitions)

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    Lys A:693 - Pro A:694   [ RasMol ]  
 

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  4two
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  EPHA3_HUMAN | P29320
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  2.7.10.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        EPHA3_HUMAN | P29320: 2gsf 2qo2 2qo7 2qo9 2qob 2qoc 2qod 2qof 2qoi 2qok 2qol 2qon 2qoo 2qoq 3dzq 3fxx 3fy2 4g2f 4gk2 4gk3 4gk4 4l0p 4p4c 4p5q 4p5z 4twn

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4TWO)