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(-) Description

Title :  HUMAN EPHA3 KINASE DOMAIN IN COMPLEX WITH BIRB796
 
Authors :  J. Dong, A. Caflisch
Date :  01 Jul 14  (Deposition) - 13 May 15  (Release) - 13 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.71
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase/Transferase Inhibitor, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. Dong, H. Zhao, T. Zhou, D. Spiliotopoulos, C. Rajendran, X. D. Li, D. Huang, A. Caflisch
Structural Analysis Of The Binding Of Type I, I1/2, And Ii Inhibitors To Eph Tyrosine Kinases.
Acs Med. Chem. Lett. V. 6 79 2015
PubMed-ID: 25589935  |  Reference-DOI: 10.1021/ML500355X

(-) Compounds

Molecule 1 - EPHRIN TYPE-A RECEPTOR 3
    ChainsA
    EC Number2.7.10.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidP28-LIC-THROMBIN
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentKINASE DOMAIN (UNP RESIDUES 609-947)
    GeneEPHA3, ETK, ETK1, HEK, TYRO4
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymEPH-LIKE KINASE 4,HEK4,HEK,HUMAN EMBRYO KINASE,TYROSINE- PROTEIN KINASE TYRO4,TYROSINE-PROTEIN KINASE RECEPTOR ETK1,EPH-LIKE TYROSINE KINASE 1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1B961Ligand/Ion1-(5-TERT-BUTYL-2-P-TOLYL-2H-PYRAZOL-3-YL)-3-[4-(2-MORPHOLIN-4-YL-ETHOXY)-NAPHTHALEN-1-YL]-UREA

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:653 , GLU A:670 , ILE A:673 , MET A:674 , THR A:699 , MET A:702 , GLY A:705 , TYR A:742 , SER A:763 , ASP A:764 , PHE A:765 , LEU A:767 , SER A:768 , HOH A:1190 , HOH A:1220binding site for residue B96 A 1001

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4TWN)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Lys A:693 -Pro A:694

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4TWN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4TWN)

(-) Exons   (0, 0)

(no "Exon" information available for 4TWN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:276
                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhh....hhh.eeeeeeeee...eeeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhhhh.........eeeee......eeeee.....hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee.hhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh.........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4twn A 608 TVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRNPGSLKIITSNLLLD 904
                                   617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767 ||    792       802       812       822       832       842       852       862       872       882       892||    
                                                                                                                                                                                           769|                                                                                                         893|    
                                                                                                                                                                                            785                                                                                                          900    

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4TWN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4TWN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4TWN)

(-) Gene Ontology  (32, 32)

Asymmetric/Biological Unit(hide GO term definitions)

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    Lys A:693 - Pro A:694   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        EPHA3_HUMAN | P293202gsf 2qo2 2qo7 2qo9 2qob 2qoc 2qod 2qof 2qoi 2qok 2qol 2qon 2qoo 2qoq 3dzq 3fxx 3fy2 4g2f 4gk2 4gk3 4gk4 4l0p 4p4c 4p5q 4p5z 4two

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4TWN)