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(-) Description

Title :  CRYSTAL STRUCTURE OF ATAD2A BROMODOMAIN COMPLEXED WITH H4(1-20)K5AC PEPTIDE
 
Authors :  G. Poncet-Montange, Y. Zhan, J. Bardenhagen, A. Petrocchi, E. Leo, X. S P. Leonard, M. Geck Do, M. Cardozo, W. Palmer, J. Andersen, P. Jones, J
Date :  19 Jun 14  (Deposition) - 24 Dec 14  (Release) - 04 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,P
Keywords :  Bromodomain-Acetylated Histone Complex, Gene Regulation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Poncet-Montange, Y. Zhan, J. P. Bardenhagen, A. Petrocchi, E. Leo, X. Shi, G. R. Lee, P. G. Leonard, M. K. Geck Do, M. G. Cardozo, J. N. Andersen, W. S. Palmer, P. Jones, J. E. Ladbury
Observed Bromodomain Flexibility Reveals Histone Peptide- And Small Molecule Ligand-Compatible Forms Of Atad2.
Biochem. J. V. 466 337 2015
PubMed-ID: 25486442  |  Reference-DOI: 10.1042/BJ20140933

(-) Compounds

Molecule 1 - ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 2
    Chains: A
    EC Number: 3.6.1.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PNIC28-BSA4
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: BROMODOMAIN (UNP RESIDUES 981-1108)
    Gene: ATAD2, L16, PRO2000
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: AAA NUCLEAR COREGULATOR CANCER-ASSOCIATED PROTEIN,ANCCA
 
Molecule 2 - HISTONE H4K5AC
    Chains: P
    Engineered: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: H4 HISTONE PEPTIDE WITH AN ACETYLLYSINE IN POSITION 5
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AP

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1ALY1Mod. Amino AcidN(6)-ACETYLLYSINE

(-) Sites  (0, 0)

(no "Site" information available for 4TT2)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4TT2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4TT2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4TT2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4TT2)

(-) Exons   (0, 0)

(no "Exon" information available for 4TT2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:130
                                                                                                                                                                   
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                4tt2 A  979 SMQEEDTFRELRIFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPDRDPGDRLIRHRACALRDTAYAIIKEELDEDFEQLCEEIQESR 1108
                                   988       998      1008      1018      1028      1038      1048      1058      1068      1078      1088      1098      1108


Chain P from PDB  Type:PROTEIN  Length:6
                                       
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                4tt2 P    1 SGRGxG    6
                                | 
                                5-ALY
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4TT2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4TT2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4TT2)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)

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  4tt2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ATAD2_HUMAN | Q6PL18: 3dai 4qsp 4qsq 4qsr 4qss 4qst 4qsu 4qsv 4qsw 4qsx 4qut 4quu 4tt4 4tt6 4tte 4tu4 4tu6 4tyl 4tz2 4tz8 5a5n 5a5o 5a5p 5a5q 5a5r 5a81 5a82 5a83 5epb 5f36 5f3a 5lj0

(-) Related Entries Specified in the PDB File

4tt4 4tt6 4tte 4tu4 4tu6