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(-) Description

Title :  THE STRUCTURE OF N-FORMIMINO-L-GLUTAMATE IMINOHYDROLASE FROM PSEUDOMONAS AERUGINOSA COMPLEXED WITH N-FORMIMINO-L-ASPARTATE, SOAKED WITH MERCURY
 
Authors :  A. A. Fedorov, E. V. Fedorov, R. Marti-Arbona, F. M. Raushel, S. C. Almo
Date :  19 Dec 14  (Deposition) - 14 Jan 15  (Release) - 11 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.86
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Amidohydrolase Fold, N-Formimino-L-Glutamate Iminohydrolase, N- Formimino-L-Aspartate, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. A. Fedorov, R. Marti-Arbona, V. V. Nemmara, D. Hitchcock, E. V. Fedorov, S. C. Almo, F. M. Raushel
Structure Of N-Formimino-L-Glutamate Iminohydrolase From Pseudomonas Aeruginosa.
Biochemistry V. 54 890 2015
PubMed-ID: 25559274  |  Reference-DOI: 10.1021/BI501299Y

(-) Compounds

Molecule 1 - N-FORMIMINO-L-GLUTAMATE IMINOHYDROLASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PA5106
    Organism Scientific: PSEUDOMONAS AERUGINOSA PAO1
    Organism Taxid: 208964

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 15)

Asymmetric/Biological Unit (5, 15)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2HG6Ligand/IonMERCURY (II) ION
3NFQ2Ligand/IonN-[(E)-IMINOMETHYL]-L-ASPARTIC ACID
4SO44Ligand/IonSULFATE ION
5ZN2Ligand/IonZINC ION

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:58 , GLN A:61 , PHE A:78 , ARG A:82 , TYR A:121 , HIS A:206 , ARG A:209 , GLU A:235 , LEU A:298 , HOH A:620 , HOH A:652 , HOH A:677 , HOH A:678 , HOH A:1040BINDING SITE FOR RESIDUE NFQ A 501
02AC2SOFTWAREHIS A:56 , HIS A:58 , HIS A:232 , ASP A:320 , HOH A:1040BINDING SITE FOR RESIDUE ZN A 502
03AC3SOFTWAREPHE A:164 , CYS A:243 , SER A:247 , HOH A:1083BINDING SITE FOR RESIDUE HG A 503
04AC4SOFTWAREGLU A:98 , CYS A:102 , HG A:505 , HOH A:739 , HOH A:758 , HOH A:1057BINDING SITE FOR RESIDUE HG A 504
05AC5SOFTWARECYS A:102 , HG A:504 , HOH A:758 , HOH A:812 , HOH A:934BINDING SITE FOR RESIDUE HG A 505
06AC6SOFTWAREGLY A:179 , SER A:180 , GLN A:215 , HOH A:668 , HOH A:915 , HOH A:1051BINDING SITE FOR RESIDUE SO4 A 506
07AC7SOFTWARESER A:2 , ILE A:23 , SER A:24 , GLY A:425 , HOH A:836 , HOH A:908 , HOH A:929BINDING SITE FOR RESIDUE GOL A 507
08AC8SOFTWAREHIS B:58 , GLN B:61 , PHE B:78 , ARG B:82 , TYR B:121 , HIS B:206 , ARG B:209 , GLU B:235 , LEU B:298 , ASP B:320 , HOH B:601 , HOH B:620 , HOH B:638 , HOH B:674 , HOH B:677BINDING SITE FOR RESIDUE NFQ B 501
09AC9SOFTWAREHIS B:56 , HIS B:58 , HIS B:232 , ASP B:320 , HOH B:601BINDING SITE FOR RESIDUE ZN B 502
10BC1SOFTWAREPHE B:164 , CYS B:243 , SER B:247 , HOH B:1014BINDING SITE FOR RESIDUE HG B 503
11BC2SOFTWARECYS B:102 , HG B:505 , HOH B:903BINDING SITE FOR RESIDUE HG B 504
12BC3SOFTWAREGLU B:98 , CYS B:102 , HG B:504 , HOH B:726 , HOH B:797BINDING SITE FOR RESIDUE HG B 505
13BC4SOFTWAREILE A:302 , ILE B:302 , HOH B:828BINDING SITE FOR RESIDUE SO4 B 506
14BC5SOFTWAREGLY B:179 , SER B:180 , GLU B:181 , GLN B:215 , HOH B:695BINDING SITE FOR RESIDUE SO4 B 507
15BC6SOFTWAREGLN B:237 , ARG B:250 , HIS B:272 , HOH B:1011 , HOH B:1012 , HOH B:1013BINDING SITE FOR RESIDUE SO4 B 508

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RZB)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4RZB)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RZB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RZB)

(-) Exons   (0, 0)

(no "Exon" information available for 4RZB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:451
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee..eeeeeeeeee.....eeeee........ee....eee.eeeeeehhhhhhhh...........hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.eeeeeeee..............hhhhhhhhhhhhhhh.eeeeee....eee...ee.hhhhhhhh.hhhhhhhhhhhhhhhhhhh..ee.eeeee....hhhhhhhhhh.......eeeee..hhhhhhhhhhhhh.hhhhhhhhhh.....eeeee....hhhhhhhhhhhh.eeeehhhhhhhh.....hhhhhhhh..eeee........hhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhh.............eeee...hhhhhh.hhhhhhhhhhhhhhhh.eeeeee..eeee......hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rzb A   2 SAIFAERALLPEGWARNVRFEISADGVLAEIRPDANADGAERLGGAVLPGMPNLHSHAFQRAMAGLAEVAGNPNDSFWTWRELMYRMVARLSPEQIEVIACQLYIEMLKAGYTAVAEFHYVHHDLDGRSYADPAELSLRISRAASAAGIGLTLLPVLYSHAGFGGQPASEGQRRFINGSEAYLELLQRLRAPLEAAGHSLGLCFHSLRAVTPQQIATVLAAGHDDLPVHIHIAEQQKEVDDCQAWSGRRPLQWLYENVAVDQRWCLVHATHADPAEVAAMARSGAVAGLCLSTEANLGDGIFPATDFLAQGGRLGIGSDSHVSLSVVEELRWLEYGQRLRDRKRNRLYRDDQPMIGRTLYDAALAGGAQALGQPIGSLAVGRRADLLVLDGNDPYLASAEGDALLNRWLFAGGDRQVRDVMVAGRWVVRDGRHAGEERSARAFVQVLGELL 452
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451 


Chain B from PDB  Type:PROTEIN  Length:451
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee..eeeeeeeeee.....eeeee........ee....eee.eeeeeehhhhhhhh...........hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhheeeeeeee..............hhhhhhhhhhhhhhh.eeeeee....eee...ee.hhhhhhhh.hhhhhhhhhhhhhhhhhhh..ee.eee......hhhhhhhhhh.......eeeee..hhhhhhhhhhhhh.hhhhhhhhhh.....eeeee....hhhhhhhhhhhh.eeeehhhhhhhh.....hhhhhhhh..eeee........hhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhh.............eeee...hhhhhh.hhhhhhhhhhhhhhhh.eeeeee..eeee......hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rzb B   2 SAIFAERALLPEGWARNVRFEISADGVLAEIRPDANADGAERLGGAVLPGMPNLHSHAFQRAMAGLAEVAGNPNDSFWTWRELMYRMVARLSPEQIEVIACQLYIEMLKAGYTAVAEFHYVHHDLDGRSYADPAELSLRISRAASAAGIGLTLLPVLYSHAGFGGQPASEGQRRFINGSEAYLELLQRLRAPLEAAGHSLGLCFHSLRAVTPQQIATVLAAGHDDLPVHIHIAEQQKEVDDCQAWSGRRPLQWLYENVAVDQRWCLVHATHADPAEVAAMARSGAVAGLCLSTEANLGDGIFPATDFLAQGGRLGIGSDSHVSLSVVEELRWLEYGQRLRDRKRNRLYRDDQPMIGRTLYDAALAGGAQALGQPIGSLAVGRRADLLVLDGNDPYLASAEGDALLNRWLFAGGDRQVRDVMVAGRWVVRDGRHAGEERSARAFVQVLGELL 452
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RZB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RZB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RZB)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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        Q9HU77_PSEAE | Q9HU77: 3mdu 3mdw 4rdv 4rdw

(-) Related Entries Specified in the PDB File

3mdw THE SAME PROTEIN COMPLEXED WITH THE SAME INHIBITOR BUT NOT SOAKED WITH MERCURY