PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
4RZB
Asym. Unit
Info
Asym.Unit (311 KB)
Biol.Unit 1 (305 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
THE STRUCTURE OF N-FORMIMINO-L-GLUTAMATE IMINOHYDROLASE FROM PSEUDOMONAS AERUGINOSA COMPLEXED WITH N-FORMIMINO-L-ASPARTATE, SOAKED WITH MERCURY
Authors
:
A. A. Fedorov, E. V. Fedorov, R. Marti-Arbona, F. M. Raushel, S. C. Almo
Date
:
19 Dec 14 (Deposition) - 14 Jan 15 (Release) - 11 Feb 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.86
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Amidohydrolase Fold, N-Formimino-L-Glutamate Iminohydrolase, N- Formimino-L-Aspartate, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. A. Fedorov, R. Marti-Arbona, V. V. Nemmara, D. Hitchcock, E. V. Fedorov, S. C. Almo, F. M. Raushel
Structure Of N-Formimino-L-Glutamate Iminohydrolase From Pseudomonas Aeruginosa.
Biochemistry V. 54 890 2015
[
close entry info
]
Hetero Components
(5, 15)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
2a: MERCURY (II) ION (HGa)
2b: MERCURY (II) ION (HGb)
2c: MERCURY (II) ION (HGc)
2d: MERCURY (II) ION (HGd)
2e: MERCURY (II) ION (HGe)
2f: MERCURY (II) ION (HGf)
3a: N-[(E)-IMINOMETHYL]-L-ASPARTIC ACI... (NFQa)
3b: N-[(E)-IMINOMETHYL]-L-ASPARTIC ACI... (NFQb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
2
HG
6
Ligand/Ion
MERCURY (II) ION
3
NFQ
2
Ligand/Ion
N-[(E)-IMINOMETHYL]-L-ASPARTIC ACID
4
SO4
4
Ligand/Ion
SULFATE ION
5
ZN
2
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:58 , GLN A:61 , PHE A:78 , ARG A:82 , TYR A:121 , HIS A:206 , ARG A:209 , GLU A:235 , LEU A:298 , HOH A:620 , HOH A:652 , HOH A:677 , HOH A:678 , HOH A:1040
BINDING SITE FOR RESIDUE NFQ A 501
02
AC2
SOFTWARE
HIS A:56 , HIS A:58 , HIS A:232 , ASP A:320 , HOH A:1040
BINDING SITE FOR RESIDUE ZN A 502
03
AC3
SOFTWARE
PHE A:164 , CYS A:243 , SER A:247 , HOH A:1083
BINDING SITE FOR RESIDUE HG A 503
04
AC4
SOFTWARE
GLU A:98 , CYS A:102 , HG A:505 , HOH A:739 , HOH A:758 , HOH A:1057
BINDING SITE FOR RESIDUE HG A 504
05
AC5
SOFTWARE
CYS A:102 , HG A:504 , HOH A:758 , HOH A:812 , HOH A:934
BINDING SITE FOR RESIDUE HG A 505
06
AC6
SOFTWARE
GLY A:179 , SER A:180 , GLN A:215 , HOH A:668 , HOH A:915 , HOH A:1051
BINDING SITE FOR RESIDUE SO4 A 506
07
AC7
SOFTWARE
SER A:2 , ILE A:23 , SER A:24 , GLY A:425 , HOH A:836 , HOH A:908 , HOH A:929
BINDING SITE FOR RESIDUE GOL A 507
08
AC8
SOFTWARE
HIS B:58 , GLN B:61 , PHE B:78 , ARG B:82 , TYR B:121 , HIS B:206 , ARG B:209 , GLU B:235 , LEU B:298 , ASP B:320 , HOH B:601 , HOH B:620 , HOH B:638 , HOH B:674 , HOH B:677
BINDING SITE FOR RESIDUE NFQ B 501
09
AC9
SOFTWARE
HIS B:56 , HIS B:58 , HIS B:232 , ASP B:320 , HOH B:601
BINDING SITE FOR RESIDUE ZN B 502
10
BC1
SOFTWARE
PHE B:164 , CYS B:243 , SER B:247 , HOH B:1014
BINDING SITE FOR RESIDUE HG B 503
11
BC2
SOFTWARE
CYS B:102 , HG B:505 , HOH B:903
BINDING SITE FOR RESIDUE HG B 504
12
BC3
SOFTWARE
GLU B:98 , CYS B:102 , HG B:504 , HOH B:726 , HOH B:797
BINDING SITE FOR RESIDUE HG B 505
13
BC4
SOFTWARE
ILE A:302 , ILE B:302 , HOH B:828
BINDING SITE FOR RESIDUE SO4 B 506
14
BC5
SOFTWARE
GLY B:179 , SER B:180 , GLU B:181 , GLN B:215 , HOH B:695
BINDING SITE FOR RESIDUE SO4 B 507
15
BC6
SOFTWARE
GLN B:237 , ARG B:250 , HIS B:272 , HOH B:1011 , HOH B:1012 , HOH B:1013
BINDING SITE FOR RESIDUE SO4 B 508
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (311 KB)
Header - Asym.Unit
Biol.Unit 1 (305 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4RZB
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help