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(-) Description

Title :  HUMAN P70S6K1 WITH RUTHENIUM-BASED INHIBITOR FL772
 
Authors :  J. F. Domsic, J. Barber-Rotenberg, J. Salami, J. Qin, R. Marmorstein
Date :  17 Oct 14  (Deposition) - 21 Jan 15  (Release) - 21 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.79
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Keywords :  Kinase, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Qin, R. Rajaratnam, L. Feng, J. Salami, J. S. Barber-Rotenberg, J. Domsic, P. Reyes-Uribe, H. Liu, W. Dang, S. L. Berger, J. Villanueva E. Meggers, R. Marmorstein
Development Of Organometallic S6K1 Inhibitors.
J. Med. Chem. V. 58 305 2015
PubMed-ID: 25356520  |  Reference-DOI: 10.1021/JM5011868

(-) Compounds

Molecule 1 - P70S6K1
    Chains: A
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Fragment: UNP RESIDUES 85-372
    Gene: RPS6KB1, STK14A
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: S6K-BETA-1, S6K1, 70 KDA RIBOSOMAL PROTEIN S6 KINASE 1, P70S6K1, P70-S6K 1, RIBOSOMAL PROTEIN S6 KINASE I, SERINE/THREONINE- PROTEIN KINASE 14A, P70 RIBOSOMAL S6 KINASE ALPHA, P70 S6 KINASE ALPHA, P70 S6K-ALPHA, P70 S6KA

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric Unit (2, 7)
No.NameCountTypeFull Name
172B1Ligand/Ion[(AMINO-KAPPAN)METHANETHIOLATO](3-FLUORO-9-METHOXYPYRIDO[2,3-A]PYRROLO[3,4-C]CARBAZOLE-5,7(6H,12H)-DIONATO-KAPPA~2~N,N')(N-METHYL-1,4,7-TRITHIECAN-9-AMINE-KAPPA~3~S~1~,S~4~,S~7~)RUTHENIUM
2CL6Ligand/IonCHLORIDE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
172B1Ligand/Ion[(AMINO-KAPPAN)METHANETHIOLATO](3-FLUORO-9-METHOXYPYRIDO[2,3-A]PYRROLO[3,4-C]CARBAZOLE-5,7(6H,12H)-DIONATO-KAPPA~2~N,N')(N-METHYL-1,4,7-TRITHIECAN-9-AMINE-KAPPA~3~S~1~,S~4~,S~7~)RUTHENIUM
2CL-1Ligand/IonCHLORIDE ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
172B2Ligand/Ion[(AMINO-KAPPAN)METHANETHIOLATO](3-FLUORO-9-METHOXYPYRIDO[2,3-A]PYRROLO[3,4-C]CARBAZOLE-5,7(6H,12H)-DIONATO-KAPPA~2~N,N')(N-METHYL-1,4,7-TRITHIECAN-9-AMINE-KAPPA~3~S~1~,S~4~,S~7~)RUTHENIUM
2CL-1Ligand/IonCHLORIDE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:97 , GLY A:98 , LYS A:99 , GLY A:100 , GLY A:103 , VAL A:105 , ALA A:121 , LYS A:123 , LEU A:172 , GLU A:173 , TYR A:174 , LEU A:175 , GLU A:179 , GLU A:222 , THR A:235BINDING SITE FOR RESIDUE 72B A 401
2AC2SOFTWAREASP A:193BINDING SITE FOR RESIDUE CL A 403
3AC3SOFTWARELYS A:233 , ARG A:363BINDING SITE FOR RESIDUE CL A 404
4AC4SOFTWARELYS A:325BINDING SITE FOR RESIDUE CL A 405
5AC5SOFTWAREGLN A:211 , LYS A:212BINDING SITE FOR RESIDUE CL A 406
6AC6SOFTWAREARG A:330BINDING SITE FOR RESIDUE CL A 407

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RLP)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gly A:165 -Gly A:166

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RLP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RLP)

(-) Exons   (0, 0)

(no "Exon" information available for 4RLP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:261
                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhh.eeeeeeeee...eeeeeeee........eeeeeee...hhhhh........eeeeeee..eeeeeee....eehhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh...........eee.....eee...............hhhhhh.....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh........hhhhhhhhhhhh..hhhhh......hhhhhhhhhhhh..hhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rlp A  85 KIRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKRNILEEVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLCKESGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLNLPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPPFKPL 372
                                    94       104       114       124  ||   150       160       170       180       190       200       210       220       230       240  ||   261       271       281       291       301       311       321       331       341       351       361       371 
                                                                    127|                                                                                                243|                                                                                                                     
                                                                     144                                                                                                 255
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RLP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RLP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RLP)

(-) Gene Ontology  (76, 76)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gly A:165 - Gly A:166   [ RasMol ]  
 
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  KS6B1_HUMAN | P23443
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  2.7.11.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KS6B1_HUMAN | P23443: 3a60 3a61 3a62 3we4 3wf5 3wf6 3wf7 3wf8 3wf9 4l3j 4l3l 4l42 4l43 4l44 4l45 4l46 4rlo

(-) Related Entries Specified in the PDB File

4rlo