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(-) Description

Title :  CRYSTAL STRUCTURES OF HUMAN P70S6K1-T389A (FORM II)
 
Authors :  J. Wang, C. Zhong, J. Ding
Date :  07 Jun 13  (Deposition) - 24 Jul 13  (Release) - 04 Sep 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Protein Kinase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Wang, C. Zhong, F. Wang, F. Qu, J. Ding
Crystal Structures Of S6K1 Provide Insights Into The Regulation Mechanism Of S6K1 By The Hydrophobic Motif
Biochem. J. V. 454 39 2013
PubMed-ID: 23731517  |  Reference-DOI: 10.1042/BJ20121863

(-) Compounds

Molecule 1 - RPS6KB1 PROTEIN
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Plasmid: PFASTBACHTB
    Expression System Strain: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 75-417
    Gene: RPS6KB1, HCG_1815774
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: RIBOSOMAL PROTEIN S6 KINASE BETA-1, RIBOSOMAL PROTEIN S6 KINASE, 70KDA, POLYPEPTIDE 1, ISOFORM CRA_C

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
15FI1Ligand/Ion2-{[4-(5-ETHYLPYRIMIDIN-4-YL)PIPERAZIN-1-YL]METHYL}-5-(TRIFLUOROMETHYL)-1H-BENZIMIDAZOLE
2SO43Ligand/IonSULFATE ION
3ZN1Ligand/IonZINC ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:140 , LEU A:386 , GLY A:387 , PHE A:388 , ALA A:389BINDING SITE FOR RESIDUE SO4 A 401
2AC2SOFTWAREPRO A:130 , ASP A:134 , GLU A:150 , LYS A:210 , ARG A:340BINDING SITE FOR RESIDUE SO4 A 402
3AC3SOFTWAREASN A:274 , ARG A:275 , ARG A:330 , HIS A:331BINDING SITE FOR RESIDUE SO4 A 403
4AC4SOFTWARELEU A:74 , GLY A:75 , LYS A:76 , GLY A:77 , TYR A:79 , GLY A:80 , LYS A:81 , VAL A:82 , ALA A:98 , LYS A:100 , LEU A:102 , GLU A:150 , TYR A:151 , LEU A:152 , MET A:202 , ASP A:213 , CYS A:217 , LYS A:218BINDING SITE FOR RESIDUE 5FI A 404
5AC5SOFTWARECYS A:217 , HIS A:222 , HIS A:228 , CYS A:231BINDING SITE FOR RESIDUE ZN A 405

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4L44)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly A:77 -Gly A:78

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4L44)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4L44)

(-) Exons   (0, 0)

(no "Exon" information available for 4L44)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:321
                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains d4l44a_ A: automated matches                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhh.eeeeeeeee...eeeeeeee........eeeeeeee......hhhhhhhhhhhhhhhhhh.......eeeeeee..eeeeeee.......hhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee.....................hhhhhh.....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh........hhhhhhhhhhhh............hhhhhhhhhhhhh..hhhhhhh.......................................ee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4l44 A  58 RGPEKIRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLNLPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPPFKPLLQSEEDVSQDSKFTRQTSESANQVFLGFAYVAPS 394
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217    || 232       242       252       262       272       282       292       302       312       322       332       342       352     ||363   ||  383       393 
                                                                                                                                                                                              222|                                                                                                                               358|    367|                
                                                                                                                                                                                               228                                                                                                                                360     378
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4L44)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4L44)

(-) Gene Ontology  (76, 76)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gly A:77 - Gly A:78   [ RasMol ]  
 

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  4l44
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  KS6B1_HUMAN | P23443
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KS6B1_HUMAN | P23443: 3a60 3a61 3a62 3we4 3wf5 3wf6 3wf7 3wf8 3wf9 4l3j 4l3l 4l42 4l43 4l45 4l46 4rlo 4rlp

(-) Related Entries Specified in the PDB File

4l3j 4l3l 4l42 4l43 4l45 4l46