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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE MARR FAMILY TRANSCRIPTIONAL REGULATOR HCAR FROM ACINETOBACTER SP. ADP COMPLEXED WITH VANILIN
 
Authors :  Y. Kim, G. Joachimiak, L. Bigelow, G. Cobb, A. Joachimiak, Midwest Cen Structural Genomics (Mcsg)
Date :  30 Sep 14  (Deposition) - 04 Mar 15  (Release) - 04 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Winged Helix-Turn-Helix, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Kim, G. Joachimiak, L. Bigelow, G. Cobb, A. Joachimiak
Crystal Structure Of Putative Marr Family Transcriptional Regulator Hcar From Acinetobacter Sp. Adp Complexed With Vanilin
To Be Published 2014
PubMed: search

(-) Compounds

Molecule 1 - REPRESSOR PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG19C
    Expression System Strain: BL21(DE3) GOLD
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: ACIAD1728, HCAR
    Organism Scientific: ACINETOBACTER SP. ADP1
    Organism Taxid: 62977
    Synonym: REPRESSOR PROTEIN OF THE HYDROXYCINNAMATE (HCA) CATABOLIC GENES

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 12)

Asymmetric Unit (4, 12)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MSE6Mod. Amino AcidSELENOMETHIONINE
3SO42Ligand/IonSULFATE ION
4V552Ligand/Ion4-HYDROXY-3-METHOXYBENZALDEHYDE
Biological Unit 1 (4, 24)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
2MSE12Mod. Amino AcidSELENOMETHIONINE
3SO44Ligand/IonSULFATE ION
4V554Ligand/Ion4-HYDROXY-3-METHOXYBENZALDEHYDE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:18 , TYR A:19 , HOH A:333 , HOH A:340 , LEU B:32 , LEU B:43 , PHE B:46 , THR B:47 , SER B:50 , HOH B:304BINDING SITE FOR RESIDUE V55 A 201
2AC2SOFTWAREARG A:11 , GLU A:12 , ASN B:132 , PHE B:135 , ARG B:138 , ASN B:139BINDING SITE FOR RESIDUE SO4 A 202
3AC3SOFTWAREGLU A:13 , ARG A:16 , LEU A:17 , GLU B:122 , ALA B:134 , PHE B:135BINDING SITE FOR RESIDUE GOL A 203
4AC4SOFTWAREASN A:132 , ARG A:138 , ASN A:139 , ARG B:11 , GLU B:12BINDING SITE FOR RESIDUE SO4 A 204
5AC5SOFTWARELEU A:32 , LEU A:43 , PHE A:46 , THR A:47 , VAL A:118 , HOH A:304 , SER B:18 , TYR B:19 , HOH B:305BINDING SITE FOR RESIDUE V55 B 201
6AC6SOFTWAREGLU A:122 , PHE A:135 , GLU B:13 , ARG B:16 , LEU B:17BINDING SITE FOR RESIDUE GOL B 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RGS)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Glu A:14 -Pro A:15
2Glu B:14 -Pro B:15

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RGS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RGS)

(-) Exons   (0, 0)

(no "Exon" information available for 4RGS)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:140
                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhh..eeeee.......eeeeehhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rgs A  11 REEEPRLSYmIARVDRIISKYLTEHLSALEISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQCNQVVQQLEAQmLQGVDINLAFLIRNNLELmVKNLST 150
                                    20        30        40        50        60        70        80        90       100       110       120    |  130       140   |   150
                                    20-MSE                                                                                                  125-MSE            144-MSE  


Chain B from PDB  Type:PROTEIN  Length:134
                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh...hhhhhhhhh..hhhhhhhhhhhhhhh..ee....eehhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rgs B  11 REEEPRLSYmIARVDRIISKYLTEHLSALEISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKILVTVTPSGLDKLNQCNQVVQQLEAQmLQGVDINLAFLIRNNLELmVKNLSTFSS 153
                                    20        30        40        50        60        70        80        99       109       119     | 129       139    |  149    
                                    20-MSE                                                               89|                       125-MSE            144-MSE     
                                                                                                          99
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RGS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RGS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RGS)

(-) Gene Ontology  (4, 4)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        Q7X0D9_ACIAD | Q7X0D9: 3k0l 4rgr 4rgu 4rgx 5bmz

(-) Related Entries Specified in the PDB File

3k0l THE SAME PROTEIN, APO FORM
4rgr THE SAME PROTEIN COMPLEXED WITH COUMARIC ACID
4rgu THE SAME PROTEIN COMPLEXED WITH FERULIC ACID
4rgx THE SAME PROTEIN COMPLEXED WITH 3,4-DIHYDROXY BEZOIC ACID RELATED ID: MCSG-APC105592 RELATED DB: TARGETTRACK