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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE MARR FAMILY TRANSCRIPTIONAL REGULATOR HCAR FROM ACINETOBACTER SP. ADP COMPLEXED WITH 24MER DNA.
 
Authors :  Y. Kim, G. Joachimiak, L. Biglow, G. Cobb, A. Joachimiak, Midwest Cent Structural Genomics (Mcsg)
Date :  25 May 15  (Deposition) - 14 Oct 15  (Release) - 14 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,E,F  (1x)
Biol. Unit 2:  C,D,G,H  (1x)
Keywords :  Marr, Transcription Factor, Whth, Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Kim, G. Joachimiak, L. Biglow, G. Cobb, A. Joachimiak
Crystal Structure Of Putative Marr Family Transcriptional Regulator Hcar From Acinetobacter Sp. Adp Complexed With 24Mer Dna.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HCAR PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG19C
    Expression System Strain: BL21(DE3) GOLD
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: HCAR, ACIAD1728
    Organism Scientific: ACINETOBACTER BAYLYI (STRAIN ATCC 33305 / BD413 / ADP1)
    Organism Taxid: 62977
    Strain: ATCC 33305 / BD413 / ADP1
    Synonym: REPRESSOR PROTEIN
 
Molecule 2 - DNA (5'- D(P*GP*AP*AP*TP*AP*TP*CP*AP*GP*TP*TP*AP*AP*AP*CP*TP*GP*AP*TP*AP*TP*TP *C)-3')
    Chains: E, F, G, H
    Engineered: YES
    Organism Scientific: ACINETOBACTER SP. ADP1
    Organism Taxid: 62977
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB  EF  
Biological Unit 2 (1x):   CD  GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 12)

Asymmetric Unit (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 5BMZ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5BMZ)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Glu A:14 -Pro A:15
2Glu B:14 -Pro B:15
3Glu C:14 -Pro C:15
4Glu D:14 -Pro D:15

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5BMZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5BMZ)

(-) Exons   (0, 0)

(no "Exon" information available for 5BMZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:139
                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh..eehhhhhhhh..hhhhhhhhhhhhhhh..eeeee.......eeeeehhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5bmz A  12 EEEPRLSYmIARVDRIISKYLTEHLSALEISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQCNQVVQQLEAQmLQGVDINLAFLIRNNLELmVKNLST 150
                                    21        31        41        51        61        71        81        91       101       111       121   |   131       141  |      
                                   20-MSE                                                                                                  125-MSE            144-MSE  


Chain B from PDB  Type:PROTEIN  Length:139
                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh...hhhhhhhhh..hhhhhhhhhhhhhhh..eeeee.......eeeeehhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5bmz B  12 EEEPRLSYmIARVDRIISKYLTEHLSALEISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQCNQVVQQLEAQmLQGVDINLAFLIRNNLELmVKNLST 150
                                    21        31        41        51        61        71        81        91       101       111       121   |   131       141  |      
                                   20-MSE                                                                                                  125-MSE            144-MSE  


Chain C from PDB  Type:PROTEIN  Length:139
                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh..eehhhhhhhh..hhhhhhhhhhhhhhh..eeeee.......eeeeehhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5bmz C  12 EEEPRLSYmIARVDRIISKYLTEHLSALEISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQCNQVVQQLEAQmLQGVDINLAFLIRNNLELmVKNLST 150
                                    21        31        41        51        61        71        81        91       101       111       121   |   131       141  |      
                                   20-MSE                                                                                                  125-MSE            144-MSE  


Chain D from PDB  Type:PROTEIN  Length:139
                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh...hhhhhhhhh..hhhhhhhhhhhhhhh..eeeee.......eeeeehhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5bmz D  12 EEEPRLSYmIARVDRIISKYLTEHLSALEISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQCNQVVQQLEAQmLQGVDINLAFLIRNNLELmVKNLST 150
                                    21        31        41        51        61        71        81        91       101       111       121   |   131       141  |      
                                   20-MSE                                                                                                  125-MSE            144-MSE  


Chain E from PDB  Type:DNA  Length:23
                                                       
                 5bmz E -11 GAATATCAGTTAAACTGATATTC  11
                                    -2         8   


Chain F from PDB  Type:DNA  Length:23
                                                       
                 5bmz F -11 GAATATCAGTTAAACTGATATTC  11
                                    -2         8   


Chain G from PDB  Type:DNA  Length:23
                                                       
                 5bmz G -11 GAATATCAGTTAAACTGATATTC  11
                                    -2         8   


Chain H from PDB  Type:DNA  Length:23
                                                       
                 5bmz H -11 GAATATCAGTTAAACTGATATTC  11
                                    -2         8
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5BMZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5BMZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5BMZ)

(-) Gene Ontology  (4, 4)

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  Cis Peptide Bonds
    Glu A:14 - Pro A:15   [ RasMol ]  
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q7X0D9_ACIAD | Q7X0D9: 3k0l 4rgr 4rgs 4rgu 4rgx

(-) Related Entries Specified in the PDB File

3k0l THE SAME PROTEIN
4rgr THE SAME PROTEIN COMPLEXED WITH COUMARIC ACID
4rgs THE SAME PROTEIN COMPLEXED WITH VANILLIN
4rgx THE SAME PROTEIN COMPLEXED WITH 3,4-DIHYDROXY BEZOIC ACID RELATED ID: MCSG-APC105592 RELATED DB: TARGETTRACK