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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN TEAD1 AND DISULFIDE-ENGINEERED YAP
 
Authors :  Z. Xu, Z. Zhou
Date :  21 Sep 14  (Deposition) - 19 Nov 14  (Release) - 02 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,C  (1x)
Keywords :  Immunoglobulin-Like Fold, Transcription Regulation, Dna-Binding, Protein-Protein Interaction, Phosphoprotein, Nucleus, Transcription- Protein Binding Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Zhou, T. Hu, Z. Xu, Z. Lin, Z. Zhang, T. Feng, L. Zhu, Y. Rong, H. Shen, J. M. Luk, X. Zhang, N. Qin
Targeting Hippo Pathway By Specific Interruption Of Yap-Tea Interaction Using Cyclic Yap-Like Peptides.
Faseb J. V. 29 724 2015
PubMed-ID: 25384421  |  Reference-DOI: 10.1096/FJ.14-262980

(-) Compounds

Molecule 1 - TRANSCRIPTIONAL ENHANCER FACTOR TEF-1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: YAP BINDING DOMAIN (UNP RESIDUES 209-426)
    Gene: TEAD1, TCF13, TEF1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: NTEF-1, PROTEIN GT-IIC, TEA DOMAIN FAMILY MEMBER 1, TEAD-1, TRANSCRIPTION FACTOR 13, TCF-13
 
Molecule 2 - YORKIE HOMOLOG
    Chains: C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: TEAD BINDING DOMAIN (UNP RESIDUES 50-171)
    Gene: YAP1, YAP65
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: 65 KDA YES-ASSOCIATED PROTEIN, YAP65

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A  D
Biological Unit 2 (1x):  BC 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:226 , GLY A:228 , HIS A:229BINDING SITE FOR RESIDUE CL A 501

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1C:87 -C:96
2D:87 -D:96

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Gly A:265 -Pro A:266
2Gly B:265 -Pro B:266

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RE1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RE1)

(-) Exons   (0, 0)

(no "Exon" information available for 4RE1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:206
                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeeeeeeeeeee..eeeeeeeeee......eee.hhhhhhh.....hhhhhhhhhhhh.eeeeeeee......eeeeeeeeeee....eeeeeeeeee..eeeeeeeeeee.eee..eeeeeeeeee.hhhhhhhhhhhhh..hhhhhhhhhh.eeeeeeeee.....eeeeeeeeeee.......eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4re1 A 194 RSIGTTKLRLVEFSAFLEQQRDPDSYNKHLFVHIGHPLLESVDIRQIYDKFPEKKGGLKELFGKGPQNAFFLVKFWADLNCNGAFYGVTSQYESSENMTVTCSTKVCSFGKQVVEKVETEYARFENGRFVYRINRSPMCEYMINFIHKLKHLPEKYMMNSVLENFTILLVVTNRDTQETLLCMACVFEVSNSEHGAQHHIYRLVKD 411
                                   203       213       223     ||240       250       260       270       280 ||    295       305       315       325       335       345       355       365       375       385       395       405      
                                                             229|                                          282|                                                                                                                           
                                                              237                                           288                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:202
                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeeeeeeeeeee..eeeeeeeeee...eeee.hhhhhhh.....hhhhhhhhhhhh.eeeeeeee......eeeeeeeeeee....eeeeeeeeee..eeeeeeeeeee.eee..eeeeeeeeee.hhhhhhhhhhhhh..hhhhhhhhhh.eeeeeeeee.....eeeeeeeeeee.....eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4re1 B 194 RSIGTTKLRLVEFSAFLEQQRDPDSYNKHLFVHIGLLESVDIRQIYDKFPEKKGGLKELFGKGPQNAFFLVKFWADLNCNGAFYGVTSQYESSENMTVTCSTKVCSFGKQVVEKVETEYARFENGRFVYRINRSPMCEYMINFIHKLKHLPEKYMMNSVLENFTILLVVTNRDTQETLLCMACVFEVSNSGAQHHIYRLVKD 411
                                   203       213       223    || 242       252       262       272       282|      297       307       317       327       337       347       357       367       377       387       397|      409  
                                                            228|                                         282|                                                                                                          397|           
                                                             238                                          288                                                                                                           400           


Chain C from PDB  Type:PROTEIN  Length:50
                                                                                  
               SCOP domains -------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..hhhhhhhhhhhhhhh..........hhhhh..hhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------- Transcript
                 4re1 C  50 AGHQIVHVRGDSETDLEALFNAVMNPKTANVPQTVPMCLRKLPASFCKPP  99
                                    59        69        79        89        99


Chain D from PDB  Type:PROTEIN  Length:47
                                                                               
               SCOP domains ----------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------- Pfam domains
         Sec.struct. author .eeee..hhhhhhhhhhhhhhh..........hhhhh..hhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------- PROSITE
                 Transcript ----------------------------------------------- Transcript
                 4re1 D  53 QIVHVRGDSETDLEALFNAVMNPKTANVPQTVPMCLRKLPASFCKPP  99
                                    62        72        82        92
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RE1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RE1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RE1)

(-) Gene Ontology  (54, 61)

Asymmetric Unit(hide GO term definitions)

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  4re1
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  TEAD1_HUMAN | P28347
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  YAP1_HUMAN | P46937
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TEAD1_HUMAN | P28347: 2hzd 3kys 4z8e 5nnx
        YAP1_HUMAN | P46937: 1jmq 1k5r 1k9q 1k9r 2law 2lax 2lay 2ltv 2ltw 3kys 3mhr 4rex

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4RE1)