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(-) Description

Title :  PDUA K26A S40L MUTANT, FROM SALMONELLA ENTERICA SEROVAR TYPHIMURIUM LT2
 
Authors :  S. Chun, M. R. Sawaya, T. O. Yeates
Date :  12 Sep 14  (Deposition) - 18 Feb 15  (Release) - 25 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B  (3x)
Biol. Unit 2:  C  (6x)
Keywords :  Bacterial Microcompartment Shell Protein, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Chowdhury, S. Chun, A. Pang, M. R. Sawaya, S. Sinha, T. O. Yeates, T. A. Bobik
Selective Molecular Transport Through The Protein Shell Of Bacterial Microcompartment Organelle.
Proc. Natl. Acad. Sci. Usa V. 112 2990 2015
PubMed-ID: 25713376  |  Reference-DOI: 10.1073/PNAS.1423672112

(-) Compounds

Molecule 1 - PROPANEDIOL UTILIZATION PROTEIN PDUA
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET22B+
    Expression System Strain: BL21 CODONPLUS(DE3)-RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 2-94
    Gene: PDUA, STM2038
    Mutation: YES
    Organism Scientific: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM
    Organism Taxid: 99287
    Strain: LT2

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (3x): AB 
Biological Unit 2 (6x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1SO4-1Ligand/IonSULFATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:48 , THR A:82 , ASP A:83 , VAL A:84 , GLU A:85BINDING SITE FOR RESIDUE SO4 A 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RBT)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4RBT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RBT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RBT)

(-) Exons   (0, 0)

(no "Exon" information available for 4RBT)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:89
                                                                                                                        
               SCOP domains ----------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeehhhhhhhhhhhhhhhh..eeeeeeeee..eeeeeeeeehhhhhhhhhhhhhhhh...eeeeeeeeee........... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                  4rbt A  2 QQEALGMVETKGLTAAIEAADAMVASANVMLVGYEKIGLGLVTVIVRGDVGAVKAATDAGAAAARNVGEVKAVHVIPRPHTDVEKILPK 90
                                    11        21        31        41        51        61        71        81         


Chain B from PDB  Type:PROTEIN  Length:82
                                                                                                                 
               SCOP domains ---------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeehhhhhhhhhhhhhhhh..eeeeeeeee..eeeeeeeehhhhhhhhhhhhhhhhh...eeeeeeee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------- Transcript
                  4rbt B  4 EALGMVETKGLTAAIEAADAMVASANVMLVGYEKIGLGLVTVIVRGDVGAVKAATDAGAAAARNVGEVKAVHVIPRPEKILP 89
                                    13        23        33        43        53        63        73      ||87  
                                                                                                       80|    
                                                                                                        85    


Chain C from PDB  Type:PROTEIN  Length:82
                                                                                                                 
               SCOP domains ---------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeehhhhhhhhhhhhhh...eeeeeeeeee..eeeeeeeehhhhhhhhhhhhhhhhh...eeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------- Transcript
                  4rbt C  4 EALGMVETKGLTAAIEAADAMVASANVMLVGYEKIGLGLVTVIVRGDVGAVKAATDAGAAAARNVGEVKAVHVIPRVEKILP 89
                                    13        23        33        43        53        63        73     || 87  
                                                                                                      79|     
                                                                                                       84
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RBT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RBT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RBT)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PDUA_SALTY | P0A1C7: 3ngk 4ppd 4qie 4qif 4qig 4rbu 4rbv

(-) Related Entries Specified in the PDB File

4rbu DIFFERENT PORE MUTANT
4rbv DIFFERENT PORE MUTANT