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(-) Description

Title :  STRUCTURE OF THE QBETA HOLOENZYME COMPLEX IN THE P1211 CRYSTAL FORM
 
Authors :  H. Gytz, P. Seweryn, Z. Kutlubaeva, A. B. Chetverin, D. E. Brodersen, C.
Date :  26 Aug 14  (Deposition) - 23 Sep 15  (Release) - 07 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.21
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,E  (1x)
Biol. Unit 2:  C,D,F  (1x)
Keywords :  Ob Fold, Translation, Viral Protein-Ribosomal Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Gytz, D. Mohr, P. Seweryn, Y. Yoshimura, Z. Kutlubaeva, F. Dolman, B. Chelchessa, A. B. Chetverin, F. A. Mulder, D. E. Brodersen, C. R. Knudsen
Structural Basis For Rna-Genome Recognition During Bacteriophage Q Beta Replication.
Nucleic Acids Res. V. 43 10893 2015
PubMed-ID: 26578560  |  Reference-DOI: 10.1093/NAR/GKV1212

(-) Compounds

Molecule 1 - ELONGATION FACTOR TS, ELONGATION FACTOR TU
    Chains: A, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PBAD33
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: TSF, B0170, JW0165, TUFB, B3980, JW3943
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 83333
    Strain: K12
    Synonym: EF-TS, EF-TU
 
Molecule 2 - RNA-DIRECTED RNA POLYMERASE BETA CHAIN
    Chains: B, D
    EC Number: 2.7.7.48
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PBAD33
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: ENTEROBACTERIA PHAGE QBETA
    Organism Taxid: 39803
    Synonym: RNA REPLICASE BETA CHAIN
 
Molecule 3 - 30S RIBOSOMAL PROTEIN S1
    Chains: E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11C
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: N-TERMINAL DOMAINS OB1 AND OB2
    Gene: RPSA, SSYF, B0911, JW0894
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 83333
    Strain: K12

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB  E 
Biological Unit 2 (1x):   CD F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4R71)

(-) Sites  (0, 0)

(no "Site" information available for 4R71)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4R71)

(-) Cis Peptide Bonds  (16, 16)

Asymmetric Unit
No.Residues
1Glu A:14 -Arg A:15
2Ser A:205 -Gly A:206
3Lys A:207 -Pro A:208
4Ser B:2 -Lys B:3
5Glu C:29 -Ala C:30
6Ala C:30 -Asn C:31
7Glu C:1179 -Gly C:1180
8Gly E:1 -Thr E:2
9Thr E:2 -Glu E:3
10Val E:75 -Glu E:76
11Ser E:134 -Leu E:135
12Leu E:145 -His E:146
13Leu E:147 -Glu E:148
14Gly F:1 -Thr F:2
15Leu F:147 -Glu F:148
16Glu F:148 -Gly F:149

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4R71)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4R71)

(-) Exons   (0, 0)

(no "Exon" information available for 4R71)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:650
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.....hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee...eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh...eeeeeeeee..eeeeeee...eeeeeeee..hhhhhhhhhhhhhhhh....hhhhh...hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.........ee..eeeeehhhhhhhhh.eeeeeeeee..........hhhhhhhhhh...hhhhhh...eeeeeeee.hhhhhhhhhhhhhhhhhhhhh....eeee....eeeeee..hhhhhhhhhhhh.....eeeeeee.......hhhhhhhhhhhh....eeeeeehhhhh.hhhhhhhhhhhhhhhhhh...hhhhh.eee.hhhhhh..hhhhhhhhhhhhhhhhhhh....hhhhh..eee..eeeee...eeeeeee....eee...eeeee.....eeeeeeeee....ee.eee...eeeeee...hhhhh....eee.....eeeeeeeeeeee..................eeee..eeeeeeee............eeeeeeeeeeeeee....eeeeee..eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4r71 A    4 ITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEVLKAQFEEERVALVAKIGENINIRRVAALEGDVLGSYQHGARIGVLVAAKGADEELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGRMKKFTGEVSLTGQPFVMEPSKTVGQLLKEHNAEVTGFIRFEVGEGIEKVETDFAAEVAAMSKQSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLS 1394
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273      1002      1012      1022      1032      1042|     1074      1084      1094      1104      1114      1124      1134      1144      1154      1164      1174      1184      1194      1204      1214      1224      1234      1244      1254      1264      1274      1284      1294      1304      1314      1324      1334      1344      1354      1364      1374      1384      1394
                                                                                                                                                                                                                                                                                                                282|                                    1042|                                                                                                                                                                                                                                                                                                                                         
                                                                                                                                                                                                                                                                                                                1002                                     1065                                                                                                                                                                                                                                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:556
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhh.......hhhhhhhhhhhhhh......hhhhhh........hhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh..........hhhhhhhhhhhhh.eeehhhhhhhhhhhhh.......eeee..eeeeeeee.....eeeeee.hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh.eeee...hhhhhhhhhhhhhhhhhhhhhhhhhhh..eee.....eee..........hhhhhhhhhhhhhhhhhhhhhh......eee..eeeee..hhhhhhhhhhhh..............eeee..eeee..ee...........hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh...hhhhhhee........ee.hhhhh...ee....eeeeeeeeeeeee..hhhhhhhhhhhhhhh...hhhhhhhh........eeeeeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4r71 B    1 MSKTASSRNSLSAQLRRAANTRIEVEGNLALSIANDLLLAYGQSPFNSEAECISFSPRFDGTPDDFRINYLKAEIMSKYDDFSLGIDTEAVAWEKFLAAEAECALTNARLYRPDYSEDFNFSLGESCIHMARRKIAKLIGDVPSVEGMLRHCRFSGGATTTNNRSYGHPSFKFALPQACTPRALKYVLALRASTHFDTRISDISPFNKAVTVPKNSKTDRCIAIEPGWNMFFQLGIGGILRDRLRCWGIDLNDQTINQRRAHEGSVTNNLATVDLSAASDSISLALCELLLPPGWFEVLMDLRSPKGRLPDGSVVTYEKISSMGNGYTFELESLIFASLARSVCEILDLDSSEVTVYGDDIILPSCAVPALREVFKYVGFTTNTKKTFSEGPFRESCGKHYYSGVDVTPFYIRHRIVSPADLILVLNNLYRWATIDGVWDPRAHSVYLKYRKLLPKQLQRNTIPDGYGDGALVGSVLINPFAKNRGWIRYVPVITDHTRDRERAELGSYLYDLFSRCLSSADLFAIDQLICRSNPTKISRSTGKFDIQYIACSSRV  571
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       535       545       555       565      
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                519|                                    
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 535                                    


Chain C from PDB  Type:PROTEIN  Length:650
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh...hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee....eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh...eeeeeeee...eeeeeee...eeeeeeee..hhhhhhhhhhhhhhhh....hhhhh..hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.........ee..eeeeehhhhhhhhh.eeeeeeeee..........hhhhhhhhhhh.hhhhhh..eeeeeeee.hhhhhhhhhhhhhhhhhhhhh....eeee....eeeeee..hhhhhhhhhhhh.....eeeeeee.......hhhhhhhhhhhhh...eeeeeehhhhh.hhhhhhhhhhhhhhhhhh...hhhhh.eee.hhhhhh..hhhhhhhhhhhhhhhhhh.....hhhhh..eee..eeeee...eeeeeee....eee...eeeee.....eeeeeeeee....ee.eee...eeeeee...hhhhh....eee.....eeeeeeeeeeee..................eeee..eeeeee..............eeeeeeeeeeeeee....eeeeee..eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4r71 C    2 AEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEVLKAQFEEERVALVAKIGENINIRRVAALEGDVLGSYQHGARIGVLVAAKGADEELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGRMKKFTGEVSLTGQPFVMEPSKTVGQLLKEHNAEVTGFIRFEVGEGIEKVETDFAAEVAAMSKKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLS 1393
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281|     1011      1021      1031      1041|     1073      1083      1093      1103      1113      1123      1133      1143      1153      1163      1173      1183      1193      1203      1213      1223      1233      1243      1253      1263      1273      1283      1293      1303      1313      1323      1333      1343      1353      1363      1373      1383      1393
                                                                                                                                                                                                                                                                                                                 281|                                   1041|                                                                                                                                                                                                                                                                                                                                         
                                                                                                                                                                                                                                                                                                                 1002                                    1064                                                                                                                                                                                                                                                                                                                                         


Chain D from PDB  Type:PROTEIN  Length:553
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh.......hhhhhhhhhhhhhh......hhhhhhhh......hhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh..........hhhhhhhhhhhhh.eee...hhhhhhhhhh.......eeee..eeeeeeee.....eeeeee.hhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhh.eeeee..hhhhh.hhhhhhhhhhhhhhhhhhhhh..eee.....eee..........hhhhhhhhhhhhhhhhhhhhh.......eee..eeeee..hhhhhhhhhhhhh.............eeee..eeee..ee...........hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh...hhhhhhee........ee.hhhhh...eee..eeeeeeeeeeeeee..hhhhhhhhhhhhhhh.....hhhhhhhhh.......eeeeeeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4r71 D    7 SRNSLSAQLRRAANTRIEVEGNLALSIANDLLLAYGQSPFNSEAECISFSPRFDGTPDDFRINYLKAEIMSKYDDFSLGIDTEAVAWEKFLAAEAECALTNARLYRPDYSEDFNFSLGESCIHMARRKIAKLIGDVPSVEGMLRHCRFSGGATTTNNRSYGHPSFKFALPQACTPRALKYVLALRASTHFDTRISDISPFNKAVTVPKNSKTDRCIAIEPGWNMFFQLGIGGILRDRLRCWGIDLNDQTINQRRAHEGSVTNNLATVDLSAASDSISLALCELLLPPGWFEVLMDLRSPKGRLPDGSVVTYEKISSMGNGYTFELESLIFASLARSVCEILDLDSSEVTVYGDDIILPSCAVPALREVFKYVGFTTNTKKTFSEGPFRESCGKHYYSGVDVTPFYIRHRIVSPADLILVLNNLYRWATIDGVWDPRAHSVYLKYRKLLPKQLQRNTIPDGYGDGALVGSVLINPFAKNRGWIRYVPVITDHTRDRERAELGSYLYDLFSRCLSCDSADLFAIDQLICRSNPTKISRSTGKFDIQYIACSSRVL  572
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516  ||   539       549       559       569   
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          519|                                       
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           533                                       


Chain E from PDB  Type:PROTEIN  Length:157
                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhh.....eeeeeeeee...eeeee......eeee.hhhh............eeeee.............hhhhhhhhhhhhhh..eeeeeeeee....eeeee..eeeee...........eeeeeeeee......eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4r71 E    1 GTESFAQLFEESLKEIETRPGSIVRGVVVAIDKDVVLVDAGLKSESAIPAEQFKNAQGELEIQVGDEVDVALDAVELLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVELNGIRAFLPGSLTLHLEGKELEFKVIKLDQKRNNVVVSRR  171
                                    10        20        30        40        50        60        70     || 86        96       106       116       126       144       154       164       
                                                                                                      76|                                                 135|                           
                                                                                                       83                                                  144                           


Chain F from PDB  Type:PROTEIN  Length:159
                                                                                                                                                                                                
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhh.....eeeeeeeeee..eeeee......eeee.hhhh............eeeee..............hhhhhhhhhhhhhh...eeeeeeee....eeeee..eeeee............eeeeeeeee......eeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4r71 F    1 GTESFAQLFEESLKEIETRPGSIVRGVVVAIDKDVVLVDAGLKSESAIPAEQFKNAQGELEIQVGDEVDVALDAVETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVELNGIRAFLPGSLVDVHLEGKELEFKVIKLDQKRNNVVVSRR  171
                                    10        20        30        40        50        60        70    ||  85        95       105       115       125       135  ||   152       162         
                                                                                                     75|                                                      138|                         
                                                                                                      81                                                       146
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4R71)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4R71)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4R71)

(-) Gene Ontology  (30, 43)

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  Cis Peptide Bonds
    Ala C:30 - Asn C:31   [ RasMol ]  
    Glu A:14 - Arg A:15   [ RasMol ]  
    Glu C:1179 - Gly C:1180   [ RasMol ]  
    Glu C:29 - Ala C:30   [ RasMol ]  
    Glu F:148 - Gly F:149   [ RasMol ]  
    Gly E:1 - Thr E:2   [ RasMol ]  
    Gly F:1 - Thr F:2   [ RasMol ]  
    Leu E:145 - His E:146   [ RasMol ]  
    Leu E:147 - Glu E:148   [ RasMol ]  
    Leu F:147 - Glu F:148   [ RasMol ]  
    Lys A:207 - Pro A:208   [ RasMol ]  
    Ser A:205 - Gly A:206   [ RasMol ]  
    Ser B:2 - Lys B:3   [ RasMol ]  
    Ser E:134 - Leu E:135   [ RasMol ]  
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    Val E:75 - Glu E:76   [ RasMol ]  
 
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  4r71
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  EFTS_ECOLI | P0A6P1
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  EFTU2_ECOLI | P0CE48
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  RDRP_BPQBE | P14647
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  RS1_ECOLI | P0AG67
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  2.7.7.48
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        EFTS_ECOLI | P0A6P1: 1efu 3agp 3agq 3avt 3avu 3avv 3avw 3avx 3avy 3mmp 3vnu 3vnv 4fwt 4pc3 4pc7 4q7j
        EFTU2_ECOLI | P0CE48: 1d8t 1dg1 1efc 1efm 1efu 1etu 1ls2 1ob2 1qzd 2bvn 2hcj 2hdn 3agp 3agq 3avt 3avu 3avv 3avw 3avx 3avy 3ep2 3eq3 3eq4 3mmp 3vnu 3vnv 4fwt 4v69 4v6k 4v6l 5afi
        RDRP_BPQBE | P14647: 3agp 3agq 3avt 3avu 3avv 3avw 3avx 3avy 3mmp 3vnu 3vnv 4fwt 4q7j
        RS1_ECOLI | P0AG67: 2bh8 2khi 2khj 4q7j

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4R71)