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Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  ELONGATION FACTOR COMPLEX EF-TU/EF-TS FROM ESCHERICHIA COLI
 
Authors :  T. Kawashima, C. Berthet-Colominas, M. Wulff, S. Cusack, R. Leberman
Date :  09 Jul 96  (Deposition) - 11 Jan 97  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Elongation Factor, Complex (Two Elongation Factors) (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. Kawashima, C. Berthet-Colominas, M. Wulff, S. Cusack, R. Leberman
The Structure Of The Escherichia Coli Ef-Tu. Ef-Ts Complex At 2. 5 A Resolution.
Nature V. 379 511 1996
PubMed-ID: 8596629  |  Reference-DOI: 10.1038/379511A0
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ELONGATION FACTOR TU
    ChainsA, C
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System GeneTSF
    Expression System PlasmidCPC40
    Expression System Taxid562
    Organism ScientificESCHERICHIA COLI
    Organism Taxid562
    StrainN4830-1
    SynonymELONGATION FACTOR FOR TRANSFER, HEAT UNSTABLE, EF- TU
 
Molecule 2 - ELONGATION FACTOR TS
    ChainsB, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System GeneTSF
    Expression System PlasmidCPC40
    Expression System Taxid562
    Organism ScientificESCHERICHIA COLI
    Organism Taxid562
    Other DetailsTHE CPC40 WITH THE TSF GENE INSERTED WAS USED TO TRANSFORM N4830-1. THIS LEAD TO THE COPURIFICATION OF EF-TU AND EF-TS.
    StrainN4830-1
    SynonymELONGATION FACTOR FOR TRANSFER, HEAT STABLE, EF- TS

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1EFU)

(-) Sites  (0, 0)

(no "Site" information available for 1EFU)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1EFU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1EFU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1EFU)

(-) PROSITE Motifs  (3, 6)

Asymmetric/Biological Unit (3, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EF_TS_1PS01126 Elongation factor Ts signature 1.EFTS_ECOLI12-27
 
  2B:11-26
D:11-26
2G_TR_1PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature.EFTU1_ECOLI51-66
 
  2A:64-65
C:64-65
EFTU2_ECOLI51-66
 
  2A:64-65
C:64-65
3EF_TS_2PS01127 Elongation factor Ts signature 2.EFTS_ECOLI75-85
 
  2B:74-84
D:74-84

(-) Exons   (0, 0)

(no "Exon" information available for 1EFU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:364
 aligned with EFTU1_ECOLI | P0CE47 from UniProtKB/Swiss-Prot  Length:394

    Alignment length:385
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389     
          EFTU1_ECOLI    10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLG 394
               SCOP domains d1efua3 A:9-204 Elongation factor                      Tu (EF-Tu), N-terminal (G) domain                                                                                                            d1efua1 A:205-296 Elongation factor Tu (EF-Tu), domain 2                                    d1efua2 A:297-393 Elongation factor Tu (EF-Tu)                                                    SCOP domains
               CATH domains 1efuA01 A:9-202 P-loop containing                      nucleotide triphosphate hydrolases                                                                                                         --1efuA02 A:205-299 Translation factors                                                          1efuA03 A:300-392 Translation factors                                                        - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee.....hhhhhhhhhhhhhhhh...---------------------...eeee...eeeeeee...hhhhhhhhh.......eeeeeee......hhhhhhhhhhhh.....eeeeee.hhh...hhhhhhhhhhhhhhhhhh........eee..hhhhh...hhhhhhhhhhhhhhhhh......hhh...eee..eee......eeeeee....eee...eeeee.....eeeeeeeeee..eee.eee...eeeeee....hhh.....eeee........eeeeeeee..hhh.............eeee..eeeeeeeee...........eeeeeeee..........eeeeee..eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------G_TR_1          ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1efu A   9 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGA---------------------TSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLS 393
                                    18        28        38   |     -         -     |  68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388     
                                                            42                    64                                                                                                                                                                                                                                                                                                                                         

Chain A from PDB  Type:PROTEIN  Length:364
 aligned with EFTU2_ECOLI | P0CE48 from UniProtKB/Swiss-Prot  Length:394

    Alignment length:385
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389     
          EFTU2_ECOLI    10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLS 394
               SCOP domains d1efua3 A:9-204 Elongation factor                      Tu (EF-Tu), N-terminal (G) domain                                                                                                            d1efua1 A:205-296 Elongation factor Tu (EF-Tu), domain 2                                    d1efua2 A:297-393 Elongation factor Tu (EF-Tu)                                                    SCOP domains
               CATH domains 1efuA01 A:9-202 P-loop containing                      nucleotide triphosphate hydrolases                                                                                                         --1efuA02 A:205-299 Translation factors                                                          1efuA03 A:300-392 Translation factors                                                        - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee.....hhhhhhhhhhhhhhhh...---------------------...eeee...eeeeeee...hhhhhhhhh.......eeeeeee......hhhhhhhhhhhh.....eeeeee.hhh...hhhhhhhhhhhhhhhhhh........eee..hhhhh...hhhhhhhhhhhhhhhhh......hhh...eee..eee......eeeeee....eee...eeeee.....eeeeeeeeee..eee.eee...eeeeee....hhh.....eeee........eeeeeeee..hhh.............eeee..eeeeeeeee...........eeeeeeee..........eeeeee..eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -----------------------------------------G_TR_1          ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1efu A   9 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGA---------------------TSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLS 393
                                    18        28        38   |     -         -     |  68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388     
                                                            42                    64                                                                                                                                                                                                                                                                                                                                         

Chain B from PDB  Type:PROTEIN  Length:282
 aligned with EFTS_ECOLI | P0A6P1 from UniProtKB/Swiss-Prot  Length:283

    Alignment length:282
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281  
           EFTS_ECOLI     2 AEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEVLKAQFEEERVALVAKIGENINIRRVAALEGDVLGSYQHGARIGVLVAAKGADEELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGRMKKFTGEVSLTGQPFVMEPSKTVGQLLKEHNAEVTGFIRFEVGEGIEKVETDFAAEVAAMSKQS 283
               SCOP domains d1efub3 B:1-54                                        d1efub4 B:55-139 Elongation factor Ts (EF-Ts), dimerisation domain                   d1efub2 B:140-282 Elongation factor Ts (EF-Ts), dimerisation domain                                                                             SCOP domains
               CATH domains 1efuB01 B:1-54                                        1efuB02 B:55-140 Elongation Factor Tu; Chain B, domain 2                              1efuB03 B:141-180,B:228-261             1efuB04 B:181-227                              1efuB03 B:141-180,B:228-261       --------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhh...hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh....eeeeeeeee..eeeeeeeee..hhhh..hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh....eeeeeeeee..eeeeeee...eeeeeeee...hhhhhhhhhhhhhh......hhh..hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh..............hhhhhhhh..eeeeeeeee...........hhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------EF_TS_1         -----------------------------------------------EF_TS_2    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1efu B   1 AEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEVLKAQFEEERVALVAKIGENINIRRVAALEGDVLGSYQHGARIGVLVAAKGADEELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGRMKKFTGEVSLTGQPFVMEPSKTVGQLLKEHNAEVTGFIRFEVGEGIEKVETDFAAEVAAMSKQS 282
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280  

Chain C from PDB  Type:PROTEIN  Length:364
 aligned with EFTU1_ECOLI | P0CE47 from UniProtKB/Swiss-Prot  Length:394

    Alignment length:385
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389     
          EFTU1_ECOLI    10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLG 394
               SCOP domains d1efuc3 C:9-204 Elongation factor                      Tu (EF-Tu), N-terminal (G) domain                                                                                                            d1efuc1 C:205-296 Elongation factor Tu (EF-Tu), domain 2                                    d1efuc2 C:297-393 Elongation factor Tu (EF-Tu)                                                    SCOP domains
               CATH domains 1efuC01 C:9-202 P-loop containing                      nucleotide triphosphate hydrolases                                                                                                         --1efuC02 C:205-300 Translation factors                                                           1efuC03 C:301-392 Translation factors                                                       - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee.....hhhhhhhhhhhhhhhh...---------------------...eeee...eeeeeee...hhhhhhhhh.......eeeeeee......hhhhhhhhhhhh.....eeeeee.hhh...hhhhhhhhhhhhhhhhhh...hhh..eee..hhhhh...hhhhhhhhhhhhhhhh.............eee...eee.....eeeeee....eee...eeeee.....eeee...eee..eee.eee...eeeee.....hhh.....eee.........eeeeeeee..................eeee..eeeeeeeee...........eeeeeeee..........eeeeee..eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------G_TR_1          ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1efu C   9 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGA---------------------TSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLS 393
                                    18        28        38   |     -         -     |  68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388     
                                                            42                    64                                                                                                                                                                                                                                                                                                                                         

Chain C from PDB  Type:PROTEIN  Length:364
 aligned with EFTU2_ECOLI | P0CE48 from UniProtKB/Swiss-Prot  Length:394

    Alignment length:385
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389     
          EFTU2_ECOLI    10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLS 394
               SCOP domains d1efuc3 C:9-204 Elongation factor                      Tu (EF-Tu), N-terminal (G) domain                                                                                                            d1efuc1 C:205-296 Elongation factor Tu (EF-Tu), domain 2                                    d1efuc2 C:297-393 Elongation factor Tu (EF-Tu)                                                    SCOP domains
               CATH domains 1efuC01 C:9-202 P-loop containing                      nucleotide triphosphate hydrolases                                                                                                         --1efuC02 C:205-300 Translation factors                                                           1efuC03 C:301-392 Translation factors                                                       - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee.....hhhhhhhhhhhhhhhh...---------------------...eeee...eeeeeee...hhhhhhhhh.......eeeeeee......hhhhhhhhhhhh.....eeeeee.hhh...hhhhhhhhhhhhhhhhhh...hhh..eee..hhhhh...hhhhhhhhhhhhhhhh.............eee...eee.....eeeeee....eee...eeeee.....eeee...eee..eee.eee...eeeee.....hhh.....eee.........eeeeeeee..................eeee..eeeeeeeee...........eeeeeeee..........eeeeee..eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -----------------------------------------G_TR_1          ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1efu C   9 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGA---------------------TSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLS 393
                                    18        28        38   |     -         -     |  68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388     
                                                            42                    64                                                                                                                                                                                                                                                                                                                                         

Chain D from PDB  Type:PROTEIN  Length:282
 aligned with EFTS_ECOLI | P0A6P1 from UniProtKB/Swiss-Prot  Length:283

    Alignment length:282
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281  
           EFTS_ECOLI     2 AEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEVLKAQFEEERVALVAKIGENINIRRVAALEGDVLGSYQHGARIGVLVAAKGADEELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGRMKKFTGEVSLTGQPFVMEPSKTVGQLLKEHNAEVTGFIRFEVGEGIEKVETDFAAEVAAMSKQS 283
               SCOP domains d1efud3 D:1-54                                        d1efud4 D:55-139 Elongation factor Ts (EF-Ts), dimerisation domain                   d1efud2 D:140-282 Elongation factor Ts (EF-Ts), dimerisation domain                                                                             SCOP domains
               CATH domains 1efuD01 D:1-54                                        1efuD02 D:55-140 Elongation Factor Tu; Chain B, domain 2                              1efuD03 D:141-180,D:228-261             1efuD04 D:181-227                              1efuD03 D:141-180,D:228-261       --------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhh...hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh....eeeeeeeee..eeeeeeeee..hhhhh.hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh....eeeeeeeee..eeeeeee...eeeeeeee...hhhhhhhhhhhhhh......hhh..hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh..............hhhhhhhh..eeeeeeeee...........hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------EF_TS_1         -----------------------------------------------EF_TS_2    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1efu D   1 AEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEVLKAQFEEERVALVAKIGENINIRRVAALEGDVLGSYQHGARIGVLVAAKGADEELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGRMKKFTGEVSLTGQPFVMEPSKTVGQLLKEHNAEVTGFIRFEVGEGIEKVETDFAAEVAAMSKQS 282
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (5, 12)

Asymmetric/Biological Unit

(-) CATH Domains  (5, 14)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1EFU)

(-) Gene Ontology  (17, 38)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,C   (EFTU2_ECOLI | P0CE48)
molecular function
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0003924    GTPase activity    Catalysis of the reaction: GTP + H2O = GDP + phosphate.
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0003746    translation elongation factor activity    Functions in chain elongation during polypeptide synthesis at the ribosome.
biological process
    GO:0046677    response to antibiotic    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
    GO:0006414    translational elongation    The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain A,C   (EFTU1_ECOLI | P0CE47)
molecular function
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0003924    GTPase activity    Catalysis of the reaction: GTP + H2O = GDP + phosphate.
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0003746    translation elongation factor activity    Functions in chain elongation during polypeptide synthesis at the ribosome.
biological process
    GO:0046677    response to antibiotic    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
    GO:0006414    translational elongation    The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain B,D   (EFTS_ECOLI | P0A6P1)
molecular function
    GO:0005085    guanyl-nucleotide exchange factor activity    Stimulates the exchange of guanyl nucleotides associated with a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0003746    translation elongation factor activity    Functions in chain elongation during polypeptide synthesis at the ribosome.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0043547    positive regulation of GTPase activity    Any process that activates or increases the activity of a GTPase.
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
    GO:0006414    translational elongation    The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        EFTS_ECOLI | P0A6P13agp 3agq 3avt 3avu 3avv 3avw 3avx 3avy 3mmp 3vnu 3vnv 4fwt 4pc3 4pc7 4q7j 4r71
        EFTU1_ECOLI | P0CE471d8t 1dg1 1efc 1efm 1etu 1ls2 1mj1 1qzd 2bvn 2fx3 2hcj 2hdn 3ep2 3eq3 3eq4 3u2q 3u6b 3u6k 4g5g 4pc3 4pc7 4q7j 4v69 5jbq
        EFTU2_ECOLI | P0CE481d8t 1dg1 1efc 1efm 1etu 1ls2 1ob2 1qzd 2bvn 2hcj 2hdn 3agp 3agq 3avt 3avu 3avv 3avw 3avx 3avy 3ep2 3eq3 3eq4 3mmp 3vnu 3vnv 4fwt 4r71 4v69 4v6k 4v6l 5afi

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1EFU)