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(-) Description

Title :  FMRP N-TERMINAL DOMAIN (R138Q)
 
Authors :  L. K. Myrick, H. Hashimoto, X. Cheng, S. T. Warren
Date :  16 Jul 14  (Deposition) - 03 Dec 14  (Release) - 04 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.99
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Fmrp, Fmr1, Tandem Agenet, Kh, Histone Binding, Rna Binding, Nuclear, Translation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. K. Myrick, H. Hashimoto, X. Cheng, S. T. Warren
Human Fmrp Contains An Integral Tandem Agenet (Tudor) And K Motif In The Amino Terminal Domain.
Hum. Mol. Genet. V. 24 1733 2015
PubMed-ID: 25416280  |  Reference-DOI: 10.1093/HMG/DDU586

(-) Compounds

Molecule 1 - FRAGILE X MENTAL RETARDATION PROTEIN 1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET28B-HIS-SUMO
    Expression System Strain: BL21-CODONPLUS(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: N-TERMINAL DOMAIN (UNP RESIDUES 1-213)
    Gene: FMR1
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FMRP, PROTEIN FMR-1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2PB1Ligand/IonLEAD (II) ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1EDO-1Ligand/Ion1,2-ETHANEDIOL
2PB-1Ligand/IonLEAD (II) ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2PB-1Ligand/IonLEAD (II) ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS B:99BINDING SITE FOR RESIDUE PB B 301
2AC2SOFTWAREGLY B:54 , LYS B:119 , HOH B:404BINDING SITE FOR RESIDUE EDO B 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QW2)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Glu A:61 -Ser A:62
2Glu B:61 -Ser B:62

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QW2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QW2)

(-) Exons   (0, 0)

(no "Exon" information available for 4QW2)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:198
                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeee.....eeeeeeeee...eeeeee.hhh...eeee...ee...............eeeeee........eeeeeeeeeee..eeeeee.....eeeee...eee............eeeeee.....hhhhhhhhhhhhhhhhhh..eeeee....eeeeee...hhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4qw2 A   2 EELVVEVRGSNGAFYKAFVKDVHEDSITVAFENNWQPDRQIPFHDVRFPPPVGYNKDINESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIEYAACTYNEIVTIERLRSVNPNKPATKDTFHKIKLDVPEDLQQMCAKEAAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSKRAHMLIDMHFRSLRTKLSLIMR 201
                                    11        21        31        41        51        61        71        81        91       103       113       123       133       143       153       163       173       183       193        
                                                                                                                            99|                                                                                                   
                                                                                                                            102                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:200
                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.....eeeeeeeee...eeeeee.hhh...eeee...ee...............eeeeee........eeeeeeeeeee..eeeeee........eeehhh.eee............eeeeee...........hhhhhhhhhhhh..eeeee....eeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qw2 B   3 ELVVEVRGSNGAFYKAFVKDVHEDSITVAFENNWQPDRQIPFHDVRFPPPVGYNKDINESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNKPATKDTFHKIKLDVPEDLQQMCAKEAAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSKRAHMLIDMHFRSLRTKLSLIMRN 202
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QW2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QW2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QW2)

(-) Gene Ontology  (91, 91)

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  FMR1_HUMAN | Q06787
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FMR1_HUMAN | Q06787: 2bkd 2fmr 2la5 2qnd 4ova 4qvz 5de5 5de8 5dea 5uwj 5uwo

(-) Related Entries Specified in the PDB File

4qvz WILD-TYPE FMRP N-TERMINAL DOMAIN