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(-) Description

Title :  CRYSTAL STRUCTURE OF NITROALKANE OXIDASE FROM PSEUDOMONAS AERUGINOSA IN MUTANT COMPLEX FORM
 
Authors :  Y. M. Chi, J. H. Lee
Date :  02 Jun 14  (Deposition) - 08 Jul 15  (Release) - 08 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Tim Barrel, Fmn, 1Np, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. M. Chi, J. H. Lee
Crystal Structures And Reaction Mechanisms Of Nitroalkane Oxidase (Nao) From Pseudomonas Aeruginosa
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - NITRONATE MONOOXYGENASE FAMILY PROTEIN
    Chains: A, B
    EC Number: 1.7.3.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: M801_4200
    Mutation: YES
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 1352354
    Strain: PAO581
    Synonym: NAO, NITROLALKANE OXIDASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1FMN2Ligand/IonFLAVIN MONONUCLEOTIDE
2N1P2Ligand/Ion1-NITROPROPANE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:18 , PRO A:19 , MET A:20 , LEU A:21 , ASN A:69 , PHE A:71 , HIS A:133 , GLN A:176 , ALA A:180 , GLY A:181 , GLY A:217 , GLY A:218 , GLN A:237 , MET A:238 , GLY A:239 , THR A:240 , TYR A:254 , TRP A:325 , N1P A:402 , HOH A:502 , HOH A:503 , HOH A:578 , HOH A:850 , HOH A:886BINDING SITE FOR RESIDUE FMN A 401
2AC2SOFTWARELEU A:21 , TYR A:109 , CYS A:183 , TYR A:303 , TRP A:325 , FMN A:401 , HOH A:908BINDING SITE FOR RESIDUE N1P A 402
3AC3SOFTWAREALA B:18 , PRO B:19 , MET B:20 , LEU B:21 , ASN B:69 , PHE B:71 , HIS B:133 , GLN B:176 , ALA B:180 , GLY B:181 , GLY B:217 , GLY B:218 , GLN B:237 , MET B:238 , GLY B:239 , THR B:240 , TYR B:254 , TRP B:325 , N1P B:402 , HOH B:502 , HOH B:505 , HOH B:506 , HOH B:544 , HOH B:562BINDING SITE FOR RESIDUE FMN B 401
4AC4SOFTWARELEU B:21 , TYR B:109 , TYR B:303 , TRP B:325 , FMN B:401 , HOH B:877BINDING SITE FOR RESIDUE N1P B 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QIU)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Tyr A:299 -Pro A:300
2Tyr B:299 -Pro B:300

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QIU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QIU)

(-) Exons   (0, 0)

(no "Exon" information available for 4QIU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:350
                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhh....eee.......hhhhhhhhhhhh..eeee....hhhhhhhhhhhhhh.....eeeeee.......hhhhhhhhhhhhhhhhhh....................hhhhhhhhhh..eeeee....hhhhhhhhhhh..eeeeee.hhhhhhhhhhh...eeeee.....ee....hhhhh....hhhhhhhhhhhh....eeee....hhhhhhhhhhh...eeeehhhhhh......hhhhhhhhhhhhhhh.eee.......eee....................hhhhhhhhhhhhhhhh.............hhhhh...hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qiu A   2 TDRFTRLLGIQQPIIQAPMLGVSTPALAAAVSNAGGLGSIAITGSAAEKGRALIREVRGLTDKPFNVNLFCHRPGQADPARERAWLDYLKPLFAEFGAEPPVRLKNIYLSFLEDPTLLPMLLEERPAAVSFHFGAPPRDQVRALQAVGIRVLVCATTPEEAALVEAAGADAVVAQGIEAGGCRGVFEPERGDAAIGTLALVRLLAARGSLPVVAAGGIMDGRGIRAALELGASAVQMGTAFVLCPESSANAAYREALKGPRAARTALTVTMSGRSARGLPNRMFFDAAAPGVPPLPDYPFVYDATKALQTAALARGNHDFAAQWAGQGAALARELPAAELLRTLVEELRG 351
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351


Chain B from PDB  Type:PROTEIN  Length:350
                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh....eee.......hhhhhhhhhhh...eeee....hhhhhhhhhhhhhh.....eeeeee.......hhhhhhhhhhhhhhhhhhh...................hhhhhhhhhh..eeeee....hhhhhhhhhhh..eeeeee.hhhhhhhhhhh...eeeee.....ee....hhhhh....hhhhhhhhhhhhh...eeee....hhhhhhhhhhh...eeeehhhhhh......hhhhhhhhhhhhhhh.eee.......eee....................hhhhhhhhhhhhhhhhh............hhhhh...hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qiu B   2 TDRFTRLLGIQQPIIQAPMLGVSTPALAAAVSNAGGLGSIAITGSAAEKGRALIREVRGLTDKPFNVNLFCHRPGQADPARERAWLDYLKPLFAEFGAEPPVRLKNIYLSFLEDPTLLPMLLEERPAAVSFHFGAPPRDQVRALQAVGIRVLVCATTPEEAALVEAAGADAVVAQGIEAGGCRGVFEPERGDAAIGTLALVRLLAARGSLPVVAAGGIMDGRGIRAALELGASAVQMGTAFVLCPESSANAAYREALKGPRAARTALTVTMSGRSARGLPNRMFFDAAAPGVPPLPDYPFVYDATKALQTAALARGNHDFAAQWAGQGAALARELPAAELLRTLVEELRG 351
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QIU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QIU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QIU)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4QIU)

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  Cis Peptide Bonds
    Tyr A:299 - Pro A:300   [ RasMol ]  
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(-) Related Entries Specified in the PDB File

3bw2 4qis 4qit