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(-) Description

Title :  CRYSTAL STRUCTURE OF PHOTOSWITCHABLE FLUORESCENT PROTEIN PSMORANGE2
 
Authors :  V. N. Malashkevich, S. Pletnev, S. C. Almo
Date :  25 Apr 14  (Deposition) - 09 Jul 14  (Release) - 09 Jul 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Beta-Barrel, Photoswitchable Fluorescent Protein, Chromophore, Fluorescent Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Pletnev, D. M. Shcherbakova, O. M. Subach, N. V. Pletneva, V. N. Malashkevich, S. C. Almo, Z. Dauter, V. V. Verkhusha
Orange Fluorescent Proteins: Structural Studies Of Lssmorange, Psmorange And Psmorange2.
Plos One V. 9 99136 2014
PubMed-ID: 24960050  |  Reference-DOI: 10.1371/JOURNAL.PONE.0099136

(-) Compounds

Molecule 1 - PSMORANGE2
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: LMG194
    Expression System Taxid: 562
    Mutation: YES
    Organism Common: SEA ANEMONE
    Organism Scientific: DISCOSOMA SP.
    Organism Taxid: 86600

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2OIM1Mod. Amino Acid[(4Z)-2-{(2R,5R)-2-[(1S,2S)-1-AMINO-2-METHYLBUTYL]-2-HYDROXY-5-METHYL-2,5-DIHYDRO-1,3-OXAZOL-4-YL}-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC ACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:125 , HOH A:767BINDING SITE FOR RESIDUE GOL A 500

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Q7U)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:52 -Pro A:53
2Phe A:87 -Pro A:88

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Q7U)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Q7U)

(-) Exons   (0, 0)

(no "Exon" information available for 4Q7U)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:218
                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeeeeee..eeeeeeeeeeee....eeeeeeeeee...............hhhhh.......hhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee............eeee..eeeeeeee..eeeeeeeeeeee....eeeeeeeeeeee..........................eeeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4q7u A   6 AIIKEFMRFKVHMEGTVNGHEFEIEGEGEGHPYEGFQTAKLKVTKGGPLPFAWDILSPLiSKAYVKHPADIPDYFKLSFPEGFKWERVMNYEDGGVVTVTQDSSLQDGEFIYKVKMRGTNFPSDGPVMQKKTMGWEASSERMYPEDGALKGEIRMRLKLKDGGHYTSEVKTTYKAKKSVLLPGAYIVGIKLDITSHNEDYTIVEQYERSEARHSTGGM 226
                                    15        25        35        45        55        66|       78        88        98       108       118       128       138       148       158       168       178       188       198       208       218        
                                                                                     64||                                                                                                                                                             
                                                                                      66-OIM                                                                                                                                                          
                                                                                       69
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Q7U)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Q7U)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Q7U)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        D0VWW2_DISSP | D0VWW2: 2h5o 4q7r 4q7t 5fhv 5h88

(-) Related Entries Specified in the PDB File

2h5o CRYSTAL STRUCTURE OF MORANGE
4q7r CRYSTAL STRUCTURE OF LSSMORANGE
4q7t CRYSTAL STRUCTURE OF PSMORANGE