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(-) Description

Title :  STRUCTURE OF UHRF2-SRA IN COMPLEX WITH A 5HMC-CONTAINING DNA, COMPLEX II
 
Authors :  T. Zhou, J. Xiong, M. Wang, N. Yang, J. Wong, B. Zhu, R. M. Xu
Date :  18 Mar 14  (Deposition) - 07 May 14  (Release) - 25 Jun 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.79
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Sra, 5Hmc Binding, 5Hmc-Containing Dna, Hydroxymethylation, Nuclear, Ligase-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Zhou, J. Xiong, M. Wang, N. Yang, J. Wong, B. Zhu, R. M. Xu
Structural Basis For Hydroxymethylcytosine Recognition By The Sra Domain Of Uhrf2.
Mol. Cell V. 54 879 2014
PubMed-ID: 24813944  |  Reference-DOI: 10.1016/J.MOLCEL.2014.04.003

(-) Compounds

Molecule 1 - E3 UBIQUITIN-PROTEIN LIGASE UHRF2
    Chains: A, B
    EC Number: 6.3.2.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A-SMT
    Expression System Strain: BL21(DE3) CODON PLUS RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: UHRF2, NIRF, RNF107
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: NP95/ICBP90-LIKE RING FINGER PROTEIN, NP95-LIKE RING FINGER PROTEIN, NUCLEAR PROTEIN 97, NUCLEAR ZINC FINGER PROTEIN NP97, RING FINGER PROTEIN 107, UBIQUITIN-LIKE PHD AND RING FINGER DOMAIN- CONTAINING PROTEIN 2, UBIQUITIN-LIKE-CONTAINING PHD AND RING FINGER DOMAINS PROTEIN 2
 
Molecule 2 - 5HMC-CONTAINING DNA1
    Chains: C
    Engineered: YES
    Synthetic: YES
 
Molecule 3 - 5HMC-CONTAINING DNA2
    Chains: D
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
15HC1Mod. Nucleotide2'-DEOXY-5-(HYDROXYMETHYL)CYTIDINE 5'-(DIHYDROGENPHOSPHATE)

(-) Sites  (0, 0)

(no "Site" information available for 4PW6)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PW6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PW6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PW6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PW6)

(-) Exons   (0, 0)

(no "Exon" information available for 4PW6)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:188
                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................ee.hhhhhhhh.........eeee...eeeeeee............eeeee.........hhhhhhhhh..........ee..hhhhh..eeeeee.hhhhh........eeeeeeeeeeeeeeee......eeeeeeeee........hhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pw6 A 441 IVPSNHYGPIPGIPVGSTWRFRVQVSEAGVHRPHVGGIHGRSNDGAYSLVLAGGFADEVDRGDEFTYTGSSADQTLTNMNRALALNCDAPLDDKIGAESRNWRAGKPVRVIRSFKGRKISKYAPEEGNRYDGIYKVVKYWPEISSSHGFLVWRYLLRRDDVEPAPWTSEGIERSRRLCLRLQYPAGYP 642
                                   450       460       470       480       490       500       510|      534       544       554       564       574       584       594       604       614       624       634        
                                                                                               510|                                                                                                                     
                                                                                                525                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:188
                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................ee.hhhhhhhh.........eeee...eeeeeee............eeeee.........hhhhhhhhh..........ee..hhhhh..eeeeee.hhhhh........eeeeeeeeeeeeeeee......eeeeeeeee........hhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pw6 B 441 IVPSNHYGPIPGIPVGSTWRFRVQVSEAGVHRPHVGGIHGRSNDGAYSLVLAGGFADEVDRGDEFTYTGSSADQTLTNMNRALALNCDAPLDDKIGAESRNWRAGKPVRVIRSFKGRKISKYAPEEGNRYDGIYKVVKYWPEISSSHGFLVWRYLLRRDDVEPAPWTSEGIERSRRLCLRLQYPAGYP 642
                                   450       460       470       480       490       500       510|      534       544       554       564       574       584       594       604       614       624       634        
                                                                                               510|                                                                                                                     
                                                                                                525                                                                                                                     


Chain C from PDB  Type:DNA  Length:12
                                            
                 4pw6 C   1 GTGATcGAAGTT  12
                                 |  10  
                                 6-5HC  


Chain D from PDB  Type:DNA  Length:12
                                            
                 4pw6 D   1 AACTTCGATCAC  12
                                    10
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PW6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PW6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PW6)

(-) Gene Ontology  (21, 21)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/Swiss-Prot
        UHRF2_HUMAN | Q96PU4: 1wy8 1z6u 2e6s 3oln 4pw5 4pw7 4tvr

(-) Related Entries Specified in the PDB File

4pw5