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(-) Description

Title :  TANDEM TUDOR AND PHD DOMAINS OF UHRF2
 
Authors :  J. R. Walker, A. Dong, Q. Zhang, M. Ong, S. Duan, Y. Li, C. Bountra, J. Weig A. M. Edwards, C. H. Arrowsmith, Y. Tong, Structural Genomics Conso (Sgc)
Date :  27 Jun 14  (Deposition) - 24 Jun 15  (Release) - 24 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.29
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics Consortium (Sgc), Tandem Tudor, Phd, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. R. Walker, A. Dong, Q. Zhang, M. Ong, S. Duan, Y. Li, C. Bountra, J. Weigelt, A. M. Edwards, C. H. Arrowsmith, Y. Tong, Structural Genomics Consortium (Sgc)
Structure Of The Tandem Tudor And Phd Domains Of Uhrf2
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - E3 UBIQUITIN-PROTEIN LIGASE UHRF2
    Chains: A
    EC Number: 6.3.2.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28-MHL
    Expression System Strain: BL21(DE3)-V2R-PRARE2
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: TANDEM TUDOR AND PHD DOMAINS, UNP RESIDUES 109-395
    Gene: UHRF2, NIRF, RNF107
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: NP95/ICBP90-LIKE RING FINGER PROTEIN,NP95-LIKE RING FINGER PROTEIN,NUCLEAR PROTEIN 97,NUCLEAR ZINC FINGER PROTEIN NP97,RING FINGER PROTEIN 107,UBIQUITIN-LIKE PHD AND RING FINGER DOMAIN- CONTAINING PROTEIN 2,UBIQUITIN-LIKE-CONTAINING PHD AND RING FINGER DOMAINS PROTEIN 2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric/Biological Unit (2, 10)
No.NameCountTypeFull Name
1UNX7Ligand/IonUNKNOWN ATOM OR ION
2ZN3Ligand/IonZINC ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:331 , CYS A:334 , CYS A:342 , CYS A:345binding site for residue ZN A 401
2AC2SOFTWARECYS A:347 , CYS A:350 , HIS A:370 , CYS A:373binding site for residue ZN A 402
3AC3SOFTWARECYS A:362 , CYS A:365 , CYS A:389binding site for residue ZN A 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4TVR)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Asn A:375 -Pro A:376

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4TVR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4TVR)

(-) Exons   (0, 0)

(no "Exon" information available for 4TVR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:222
                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...................eeeee......eeeeeeeeeee....eeeeeee..hhhhh.eeehhh.eee......hhhhh....eeeeee.........eeeeeeeeeeee.....eeeeeee....eeeee...........................................................ee........ee.................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4tvr A 113 TSARARLIDPGFGIYKVNELVDARDVGLGAWFEAHIHSVTRADEDVIYHIQYDEYPESGTLEMNVKDLRPRARTILKWNELNVGDVVMVNYNVESPGQRGFWFDAEITTLKTISRTKKELRVKIFLGTLNDCKIISVDEIFKIERPGAHPLSFADGKFLRRNDPCDLCGGDPEKKCHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVWYCPSCK 393
                                   122       132       142       152 ||    211       221       231       241       251       261       271       281     ||295       305       315       325   ||  336       346       356       366       376    || 391  
                                                                   154|                                                                                287|                                  329|                                               381|      
                                                                    204                                                                                 292                                   331                                                387
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4TVR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4TVR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4TVR)

(-) Gene Ontology  (21, 21)

Asymmetric/Biological Unit(hide GO term definitions)

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  UHRF2_HUMAN | Q96PU4
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        UHRF2_HUMAN | Q96PU4: 1wy8 1z6u 2e6s 3oln 4pw5 4pw6 4pw7

(-) Related Entries Specified in the PDB File

1z6u 1Z6U IS THE STRUCTURE OF THE RING ZINC FINGER OF UHRF2
3oln 3OLN IS THE STRUCTURE OF THE SRA DOMAIN OF UHRF2