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(-) Description

Title :  MYCOBACTERIUM TUBERCULOSIS RECA GLYCEROL BOUND LOW TEMPERATURE STRUCTURE IIC-N1
 
Authors :  A. V. Chandran, J. R. Prabu, N. K. Patil, K. Muniyappa, M. Vijayan
Date :  07 Mar 14  (Deposition) - 18 Mar 15  (Release) - 18 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.65
Chains :  Asym./Biol. Unit :  A
Keywords :  Homologous Recombination, Dna Repair, Atpase, Recombinase, Dna Binding Protein, Ploop Containing Ntpase Fold, Atp Binding, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. V. Chandran, J. R. Prabu, A. Nautiyal, K. N. Patil, K. Muniyappa, M. Vijayan
Structural Studies On Mycobacterium Tuberculosis Reca: Molecular Plasticity And Interspecies Variability
J. Biosci. V. 40 13 2015
PubMed-ID: 25740138  |  Reference-DOI: 10.1007/S12038-014-9497-X
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN RECA, 1ST PART, 2ND PART
    Chains: A
    EC Number: 3.1.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PEJ135
    Expression System Strain: KM4104
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: MT2806, MTV002.02C, RECA, RV2737C
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 1773
    Synonym: RECOMBINASE A

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric/Biological Unit (3, 9)
No.NameCountTypeFull Name
1EDO7Ligand/Ion1,2-ETHANEDIOL
2GOL1Ligand/IonGLYCEROL
3NA1Ligand/IonSODIUM ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:166 , ALA A:169BINDING SITE FOR RESIDUE EDO A 401
2AC2SOFTWAREASP A:121 , PHE A:218 , TYR A:219 , LYS A:251 , EDO A:406BINDING SITE FOR RESIDUE EDO A 402
3AC3SOFTWAREPRO A:42 , THR A:43 , GLY A:44 , ASP A:49 , ARG A:271 , GLU A:321 , HOH A:533BINDING SITE FOR RESIDUE EDO A 403
4AC4SOFTWAREASP A:101 , HOH A:557 , HOH A:558BINDING SITE FOR RESIDUE NA A 404
5AC5SOFTWAREARG A:7 , ALA A:87 , ASP A:140BINDING SITE FOR RESIDUE EDO A 405
6AC6SOFTWAREGLU A:157 , PHE A:218 , TYR A:219 , EDO A:402BINDING SITE FOR RESIDUE EDO A 406
7AC7SOFTWARESER A:70 , SER A:71 , GLY A:72 , LYS A:73 , THR A:74 , THR A:75 , HOH A:560 , HOH A:574BINDING SITE FOR RESIDUE GOL A 407
8AC8SOFTWAREALA A:47 , GLN A:258 , EDO A:409BINDING SITE FOR RESIDUE EDO A 408
9AC9SOFTWAREALA A:47 , ALA A:259 , GLU A:260 , EDO A:408BINDING SITE FOR RESIDUE EDO A 409

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PSA)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Asp A:145 -Ser A:146

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PSA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PSA)

(-) Exons   (0, 0)

(no "Exon" information available for 4PSA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:310
                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh.....................hhhhhhhh.........eeeeee....hhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhh......eee...hhhhhhhhhhhhhhh....eeeee......hhhhhh....hhhhhhhhhhhhhhhhhhhhhh.eeeeeee....hhhhhhhhh.eeeeeeeeeeeee..eeeeeeeeeeeeee.......eeeeeee...eehhhhhhhhhhhhh...eee..eeee..eeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4psa A   5 PDREKALELAVAQIEKSYGKGSVMRLGDEARQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEHVGLQARLMSQALRKMTGALNNSGTTAIFINQLTTTGGKALKFYASVRMDVRRVETLKDGTNAVGNRTRVKVVKNKCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENARNFLVENADVADEIEKKIKEKLGI 330
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154    || 168       178       188       210       220       230       240       250       260       270       280       290       300       310       320       330
                                                                                                                                                                                    159|                             196|                                                                                                                         
                                                                                                                                                                                     164                              209
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PSA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PSA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PSA)

(-) Gene Ontology  (33, 50)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asp A:145 - Ser A:146   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RECA_MYCTO | P9WHJ2: 1g18 1g19 1mo3 1mo4 1mo5 1mo6 2imz 2in0 2in8 2in9 2l8l 3ifj 3igd 4oqf 4po1 4po8 4po9 4poa 4ppf 4ppg 4ppn 4ppq 4pqf 4pqr 4pqy 4pr0 4psk 4psv 4ptl
        RECA_MYCTU | P9WHJ3: 1g18 1g19 1mo3 1mo4 1mo5 1mo6 2imz 2in0 2in8 2in9 2l8l 3ifj 3igd 4oqf 4po1 4po8 4po9 4poa 4ppf 4ppg 4ppn 4ppq 4pqf 4pqr 4pqy 4pr0 4psk 4psv 4ptl 5i0a 5k08

(-) Related Entries Specified in the PDB File

4oqf 4po1 4po8 4po9 4poa 4ppf 4ppg 4ppn 4ppq 4pqf 4pqr 4pqy 4pr0 4psk 4psv 4ptl