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(-) Description

Title :  MYCOBACTERIUM TUBERCULOSIS RECA GLYCEROL BOUND LOW TEMPERATURE STRUCTURE IIC-BN
 
Authors :  A. V. Chandran, J. R. Prabu, N. K. Patil, K. Muniyappa, M. Vijayan
Date :  25 Feb 14  (Deposition) - 18 Mar 15  (Release) - 18 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.95
Chains :  Asym./Biol. Unit :  A
Keywords :  Homologous Recombination, Dna Repair, Atpase, Recombinase, Dna Binding Protein, Atp Binding, Hydrolysis, Ploop Containing Ntpase Fold, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. V. Chandran, J. R. Prabu, A. Nautiyal, K. N. Patil, K. Muniyappa, M. Vijayan
Structural Studies On Mycobacterium Tuberculosis Reca: Molecular Plasticity And Interspecies Variability
J. Biosci. V. 40 13 2015
PubMed-ID: 25740138  |  Reference-DOI: 10.1007/S12038-014-9497-X
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN RECA, 1ST PART, 2ND PART
    Chains: A
    EC Number: 3.1.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PEJ135
    Expression System Strain: KM4104
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: MT2806, MTV002.02C, RECA, RV2737C
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 1773
    Synonym: RECOMBINASE A

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1EDO3Ligand/Ion1,2-ETHANEDIOL
2GOL1Ligand/IonGLYCEROL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:42 , GLY A:44 , ILE A:46 , ASP A:49 , ARG A:271BINDING SITE FOR RESIDUE EDO A 401
2AC2SOFTWAREPRO A:102 , PRO A:255 , HOH A:526BINDING SITE FOR RESIDUE EDO A 402
3AC3SOFTWARESER A:70 , SER A:71 , GLY A:72 , LYS A:73 , THR A:74 , THR A:75BINDING SITE FOR RESIDUE GOL A 403
4AC4SOFTWAREGLU A:260BINDING SITE FOR RESIDUE EDO A 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4POA)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Asp A:145 -Ser A:146

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4POA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4POA)

(-) Exons   (0, 0)

(no "Exon" information available for 4POA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:309
                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh.....................hhhhhhhh.........eeeee.....hhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhh.hhhhheee...hhhhhhhhhhhhhh.....eeeee......hhhhhh....hhhhhhhhhhhhhhhhhhhhhh.eeeeee......hhhhhh.eeeeeeeeee.........eeeeeeeeee.......eeeeeee...eehhhhhhhhhhhhh........eeee..eeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4poa A   4 TPDREKALELAVAQIEKSYGKGSVMRLGDEARQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEHVGLQARLMSQALRKMTGALNNSGTTAIFINQLTGGKALKFYASVRMDVRRVETLKDGTNAVGNRTRVKVVKNKCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENARNFLVENADVADEIEKKIKEKLGI 330
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153     ||167       177       187       211       221       231       241       251       261       271       281       291       301       311       321         
                                                                                                                                                                                     159|                             196|                                                                                                                       
                                                                                                                                                                                      164                              211
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4POA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4POA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4POA)

(-) Gene Ontology  (33, 50)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asp A:145 - Ser A:146   [ RasMol ]  
 

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  3.1.-.-
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RECA_MYCTO | P9WHJ2: 1g18 1g19 1mo3 1mo4 1mo5 1mo6 2imz 2in0 2in8 2in9 2l8l 3ifj 3igd 4oqf 4po1 4po8 4po9 4ppf 4ppg 4ppn 4ppq 4pqf 4pqr 4pqy 4pr0 4psa 4psk 4psv 4ptl
        RECA_MYCTU | P9WHJ3: 1g18 1g19 1mo3 1mo4 1mo5 1mo6 2imz 2in0 2in8 2in9 2l8l 3ifj 3igd 4oqf 4po1 4po8 4po9 4ppf 4ppg 4ppn 4ppq 4pqf 4pqr 4pqy 4pr0 4psa 4psk 4psv 4ptl 5i0a 5k08

(-) Related Entries Specified in the PDB File

4oqf 4po1 4po8 4po9 4ppf 4ppg 4ppn 4ppq 4pqf 4pqr 4pqy 4pr0 4psa 4psk 4psv 4ptl