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(-) Description

Title :  STRUCTURE OF CONA/RH4MAN
 
Authors :  F. Sakai, M. S. Weiss, G. Chen
Date :  06 Apr 14  (Deposition) - 27 Aug 14  (Release) - 27 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.89
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Lectin, Mannose, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Sakai, M. S. Weiss, G. Chen
Structure Of Cona/Rh4Man
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CONCANAVALIN-A
    Chains: A, B
    Engineered: YES
    Fragment: UNP RESIDUES 164-281, 30-148
    Synonym: CON A

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric Unit (3, 6)
No.NameCountTypeFull Name
12KO2Ligand/Ion2-{2-[2-(2-{4-[(ALPHA-D-MANNOPYRANOSYLOXY)METHYL]-1H-1,2,3-TRIAZOL-1-YL}ETHOXY)ETHOXY]ETHOXY}ETHYL 2-[3,6-BIS(DIETHYLAMINO)-9H-XANTHEN-9-YL]BENZOATE
2CA2Ligand/IonCALCIUM ION
3MN2Ligand/IonMANGANESE (II) ION
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
12KO4Ligand/Ion2-{2-[2-(2-{4-[(ALPHA-D-MANNOPYRANOSYLOXY)METHYL]-1H-1,2,3-TRIAZOL-1-YL}ETHOXY)ETHOXY]ETHOXY}ETHYL 2-[3,6-BIS(DIETHYLAMINO)-9H-XANTHEN-9-YL]BENZOATE
2CA-1Ligand/IonCALCIUM ION
3MN-1Ligand/IonMANGANESE (II) ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:12 , ASN A:14 , ASP A:16 , ARG A:90 , GLY A:98 , LEU A:99 , TYR A:100 , ALA A:207 , ASP A:208 , ILE A:217 , ASP A:218 , GLY A:227 , ARG A:228 , HOH A:437 , HOH A:441 , HOH A:443 , TYR B:176 , 2KO B:301binding site for residue 2KO A 301
2AC2SOFTWAREGLU A:8 , ASP A:10 , ASP A:19 , HIS A:24 , HOH A:422 , HOH A:423binding site for residue MN A 302
3AC3SOFTWAREASP A:10 , TYR A:12 , ASN A:14 , ASP A:19 , HOH A:424 , HOH A:425binding site for residue CA A 303
4AC4SOFTWAREARG A:90 , TYR A:100 , ILE A:141 , TYR A:176 , HIS A:205 , 2KO A:301 , TYR B:12 , ASN B:14 , GLY B:98 , LEU B:99 , TYR B:100 , TYR B:176 , ALA B:207 , ASP B:208 , GLY B:227 , ARG B:228binding site for residue 2KO B 301
5AC5SOFTWAREGLU B:8 , ASP B:10 , ASP B:19 , HIS B:24 , HOH B:409 , HOH B:410binding site for residue MN B 302
6AC6SOFTWAREASP B:10 , TYR B:12 , ASN B:14 , ASP B:19 , HOH B:411 , HOH B:412binding site for residue CA B 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4P9Y)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Ala A:207 -Asp A:208
2Ala B:207 -Asp B:208

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4P9Y)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4P9Y)

(-) Exons   (0, 0)

(no "Exon" information available for 4P9Y)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:237
                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee...hhhhh.....eeeeee......eeee.......eeeeeeeee....eeeeeee......eeeeee.hhhhhh..eeeeeeeee........eeeeeeeeeeeee.....eeeeeeee.........eeeee..ee.....ee..............eeeeee...ee.....eeeeeeeeeeeee..........eeeeeee..........hhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4p9y A   1 ADTIVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVDKRLSAVVSYPNADSATVSYDVDLDNVLPEWVRVGLSASTGLYKETNTILSWSFTSKLKSNSTHETNALHFMFNQFSKDQKDLILQGDATTGTDGNLELTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFEATFTFLIKSPDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN 237
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       


Chain B from PDB  Type:PROTEIN  Length:237
                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee...hhhhh.....eeeeee......eeee.......eeeeeeeee....eeeeeee......eeeeee.hhhhhh..eeeeeeeee........eeeeeeeeeeeee.....eeeeeeee.........eeeee..ee.....ee..............eeeeee...ee.....eeeeeeeeeeeee..........eeeeeeee.........hhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4p9y B   1 ADTIVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVDKRLSAVVSYPNADSATVSYDVDLDNVLPEWVRVGLSASTGLYKETNTILSWSFTSKLKSNSTHETNALHFMFNQFSKDQKDLILQGDATTGTDGNLELTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFEATFTFLIKSPDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN 237
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4P9Y)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4P9Y)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4P9Y)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)

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    Ala A:207 - Asp A:208   [ RasMol ]  
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CONA_CANEN | P02866: 1apn 1bxh 1c57 1ces 1cjp 1cn1 1con 1cvn 1dq0 1dq1 1dq2 1dq4 1dq5 1dq6 1enq 1enr 1ens 1gic 1gkb 1hqw 1i3h 1jbc 1jn2 1joj 1jui 1jw6 1jyc 1jyi 1nls 1nxd 1ona 1qgl 1qny 1scr 1scs 1tei 1val 1vam 1xqn 2cna 2ctv 2enr 2uu8 2yz4 3cna 3d4k 3enr 3nwk 4p9w 4p9x 4pf5 5cna

(-) Related Entries Specified in the PDB File

4p9w 4p9x