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(-) Description

Title :  CRYSTAL STRUCTURES OF THE BACTERIAL RIBOSOMAL DECODING SITE COMPLEXED WITH AMIKACIN
 
Authors :  J. Kondo, B. Francois, R. J. M. Russell, J. B. Murray, E. Westhof
Date :  28 Feb 14  (Deposition) - 07 May 14  (Release) - 07 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Aminoglycoside, Haba Group, Ribosomal Decoding Site, X-Ray Analysis, Rna, Amikacin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Kondo, B. Francois, R. J. Russell, J. B. Murray, E. Westhof
Crystal Structure Of The Bacterial Ribosomal Decoding Site Complexed With Amikacin Containing The Gamma-Amino-Alpha-Hydroxybutyryl (Haba) Group.
Biochimie V. 88 1027 2006
PubMed-ID: 16806634  |  Reference-DOI: 10.1016/J.BIOCHI.2006.05.017

(-) Compounds

Molecule 1 - 5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP *GP*UP*CP*GP*C)-3'
    Chains: A, B
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1AKN2Ligand/Ion(2S)-N-[(1R,2S,3S,4R,5S)-4-[(2R,3R,4S,5S,6R)-6-(AMINOMETHYL)-3,4,5-TRIS(OXIDANYL)OXAN-2-YL]OXY-5-AZANYL-2-[(2S,3R,4S,5S,6R)-4-AZANYL-6-(HYDROXYMETHYL)-3,5-BIS(OXIDANYL)OXAN-2-YL]OXY-3-OXIDANYL-CYCLOHEXYL]-4-AZANYL-2-OXIDANYL-BUTANAMIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREG A:15 , A A:16 , A A:17 , G A:18 , U A:19 , C A:20 , G A:21 , C A:22 , HOH A:233 , G B:24 , C B:25 , G B:26 , U B:27 , C B:28 , A B:29binding site for residue AKN A 101
2AC2SOFTWAREG A:2 , C A:3 , G A:4 , C A:6 , A A:7 , G B:37 , A B:38 , A B:39 , G B:40 , U B:41 , C B:42 , G B:43 , C B:44 , HOH B:203 , HOH B:207 , HOH B:222binding site for residue AKN B 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4P20)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:RNA  Length:21
                                                    
                  4p20 A  2 GCGUCACACCGGUGAAGUCGC 22
                                    11        21 


Chain B from PDB  Type:RNA  Length:21
                                                    
                  4p20 B 24 GCGUCACACCGGUGAAGUCGC 44
                                    33        43
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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 Related Entries

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