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(-) Description

Title :  CRYSTAL STRUCTURE OF SGCJ PROTEIN FROM STREPTOMYCES CARZINOSTATICUS
 
Authors :  C. Chang, L. Bigelow, S. Clancy, C. Bingman, R. Yennamalli, J. R. Lohman B. Shen, G. N. Phillips Jr. , G. Babnigg, A. Joachimiak, Midwest Cent Structural Genomics (Mcsg), Enzyme Discovery For Natural Pro Biosynthesis (Natpro)
Date :  20 Nov 13  (Deposition) - 25 Dec 13  (Release) - 02 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.72
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Biol. Unit 5:  I,J  (1x)
Keywords :  Neocarzinostatin Biosynthesis, Unknown Funciton, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Enzyme Discovery For Natural Product Biosynthesis, Natpro, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Huang, C. Y. Chang, J. R. Lohman, J. D. Rudolf, Y. Kim, C. Chang, D. Yang, M. Ma, X. Yan, I. Crnovcic, L. Bigelow, S. Clancy, C. A. Bingman R. M. Yennamalli, G. Babnigg, A. Joachimiak, G. N. Phillips, B. Shen
Crystal Structure Of Sgcj, An Ntf2-Like Superfamily Protein Involved In Biosynthesis Of The Nine-Membered Enediyne Antitumor Antibiotic C-1027.
J. Antibiot. 2016
PubMed-ID: 27406907  |  Reference-DOI: 10.1038/JA.2016.88

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN SGCJ
    Chains: A, B, C, D, E, F, G, H, I, J
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG57
    Expression System Strain: BL21(DE3)MAGIC
    Expression System Taxid: 469008
    Organism Scientific: STREPTOMYCES CARZINOSTATICUS SUBSP. NEOCARZINOSTATICUS
    Organism Taxid: 167636

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit : ABCDEFGHIJ
Biological Unit 1 (1x): AB        
Biological Unit 2 (1x):   CD      
Biological Unit 3 (1x):     EF    
Biological Unit 4 (1x):       GH  
Biological Unit 5 (1x):         IJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 50)

Asymmetric Unit (1, 50)
No.NameCountTypeFull Name
1MSE50Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 10)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 10)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 10)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 10)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE
Biological Unit 5 (1, 10)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4OVM)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OVM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4OVM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OVM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OVM)

(-) Exons   (0, 0)

(no "Exon" information available for 4OVM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:128
                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh.hhhhhhh.eeeeeeeee...eeeehhhhhhhhhhhhhh......eeeeeeeeeee....eeeeeeeeeee.......hhh.eeeeeeeeeee..eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ovm A  16 RDVTAVADVPRRmmEAWASNDASAFASLFAPDGTmVLPGDVFQKGVDGIREFmTKCYAGPYKGTSVFGVPIDVRFTGPDTAILITQGGVmAPGEHSVAPDKEIRATWVLGKRDGAWLVEAYHNSPVRL 143
                                    25  ||    35        45    |   55        65  |     75        85        95       105       115       125       135        
                                       28-MSE                50-MSE            68-MSE                              105-MSE                                  
                                        29-MSE                                                                                                              


Chain B from PDB  Type:PROTEIN  Length:126
                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh.hhhhhhh.eeeeeeeee...eeeehhhhhhhhhhhhhh......eeeeeeeeeee....eeeeeeeeeee.......hhh.eeeeeeeeeee..eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ovm B  17 DVTAVADVPRRmmEAWASNDASAFASLFAPDGTmVLPGDVFQKGVDGIREFmTKCYAGPYKGTSVFGVPIDVRFTGPDTAILITQGGVmAPGEHSVAPDKEIRATWVLGKRDGAWLVEAYHNSPVR 142
                                    26 ||     36        46   |    56        66 |      76        86        96       106       116       126       136      
                                      28-MSE                50-MSE            68-MSE                              105-MSE                                 
                                       29-MSE                                                                                                             


Chain C from PDB  Type:PROTEIN  Length:129
                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh.hhhhhhh.eeeeeeeee...eeeehhhhhhhhhhhhh.......eeeeeeeeeeeee..eeeeeeeeeee...........eeeeeeeeeee..eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ovm C  15 DRDVTAVADVPRRmmEAWASNDASAFASLFAPDGTmVLPGDVFQKGVDGIREFmTKCYAGPYKGTSVFGVPIDVRFTGPDTAILITQGGVmAPGEHSVAPDKEIRATWVLGKRDGAWLVEAYHNSPVRL 143
                                    24   ||   34        44     |  54        64   |    74        84        94       104|      114       124       134         
                                        28-MSE                50-MSE            68-MSE                              105-MSE                                  
                                         29-MSE                                                                                                              


Chain D from PDB  Type:PROTEIN  Length:125
                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh.hhhhhhh.eeeeeeeee...eeeehhhhhhhhhhhhhhh.....eeeeeeeeeeeee..eeeeeeeeeee............eeeeeeeeee..eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ovm D  18 VTAVADVPRRmmEAWASNDASAFASLFAPDGTmVLPGDVFQKGVDGIREFmTKCYAGPYKGTSVFGVPIDVRFTGPDTAILITQGGVmAPGEHSVAPDKEIRATWVLGKRDGAWLVEAYHNSPVR 142
                                    27||      37        47  |     57        67|       77        87        97       107       117       127       137     
                                     28-MSE                50-MSE            68-MSE                              105-MSE                                 
                                      29-MSE                                                                                                             


Chain E from PDB  Type:PROTEIN  Length:126
                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.hhhhhh..eeeeeeeee...eeeehhhhhhhhhhhhhhh.....eeeeeeeeeeeee..eeeeeeeeeee.......hhh.eeeeeeeeeee..eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ovm E  18 VTAVADVPRRmmEAWASNDASAFASLFAPDGTmVLPGDVFQKGVDGIREFmTKCYAGPYKGTSVFGVPIDVRFTGPDTAILITQGGVmAPGEHSVAPDKEIRATWVLGKRDGAWLVEAYHNSPVRL 143
                                    27||      37        47  |     57        67|       77        87        97       107       117       127       137      
                                     28-MSE                50-MSE            68-MSE                              105-MSE                                  
                                      29-MSE                                                                                                              


Chain F from PDB  Type:PROTEIN  Length:129
                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh.hhhhhhh.eeeeeeeee...eeeehhhhhhhhhhhhhh......eeeeeeeeeee....eeeeeeeeeee...........eeeeeeeeeee..eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ovm F  15 DRDVTAVADVPRRmmEAWASNDASAFASLFAPDGTmVLPGDVFQKGVDGIREFmTKCYAGPYKGTSVFGVPIDVRFTGPDTAILITQGGVmAPGEHSVAPDKEIRATWVLGKRDGAWLVEAYHNSPVRL 143
                                    24   ||   34        44     |  54        64   |    74        84        94       104|      114       124       134         
                                        28-MSE                50-MSE            68-MSE                              105-MSE                                  
                                         29-MSE                                                                                                              


Chain G from PDB  Type:PROTEIN  Length:122
                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.hhhhhhh.eeeeeeeee...eeeehhhhhhhhhhhhhhh.....eeeeeeeeeee....eeeeeeeeeee.......hhhh.eeeeeeee..eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ovm G  18 VTAVADVPRRmmEAWASNDASAFASLFAPDGTmVLPGDVFQKGVDGIREFmTKCYAGPYKGTSVFGVPIDVRFTGPDTAILITQGGVmAPGEHSVAPDKEIRATWVLGKWLVEAYHNSPVRL 143
                                    27||      37        47  |     57        67|       77        87        97       107       117       131       141  
                                     28-MSE                50-MSE            68-MSE                              105-MSE              126|            
                                      29-MSE                                                                                           131            


Chain H from PDB  Type:PROTEIN  Length:126
                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.hhhhhhh.eeeeeeeee...eeeehhhhhhhhhhhhhh......eeeeeeeeeeeee..eeeeeeeeeee...........eeeeeeeeeee..eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ovm H  18 VTAVADVPRRmmEAWASNDASAFASLFAPDGTmVLPGDVFQKGVDGIREFmTKCYAGPYKGTSVFGVPIDVRFTGPDTAILITQGGVmAPGEHSVAPDKEIRATWVLGKRDGAWLVEAYHNSPVRL 143
                                    27||      37        47  |     57        67|       77        87        97       107       117       127       137      
                                     28-MSE                50-MSE            68-MSE                              105-MSE                                  
                                      29-MSE                                                                                                              


Chain I from PDB  Type:PROTEIN  Length:120
                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh.hhhhhhh.eeeeeeeee...eeeehhhhhhhhhhhhhhh.....eeeeeeeeeeeee..eeeeeeeeeee.......hhh.eeeeeeee..eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ovm I  18 VTAVADVPRRmmEAWASNDASAFASLFAPDGTmVLPGDVFQKGVDGIREFmTKCYAGPYKGTSVFGVPIDVRFTGPDTAILITQGGVmAPGEHSVAPDKEIRATWVLWLVEAYHNSPVRL 143
                                    27||      37        47  |     57        67|       77        87        97       107       117      |133       143
                                     28-MSE                50-MSE            68-MSE                              105-MSE            124|            
                                      29-MSE                                                                                         131            


Chain J from PDB  Type:PROTEIN  Length:124
                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh.hhhhhhh.eeeeeeeee...eeeehhhhhhhhhhhhhh......eeeeeeeeee.....eeeeeeeeeee.......hhh.eeeeeeeeeee..eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ovm J  19 TAVADVPRRmmEAWASNDASAFASLFAPDGTmVLPGDVFQKGVDGIREFmTKCYAGPYKGTSVFGVPIDVRFTGPDTAILITQGGVmAPGEHSVAPDKEIRATWVLGKRDGAWLVEAYHNSPVR 142
                                    28|       38        48 |      58        68        78        88        98      |108       118       128       138    
                                    28-MSE                50-MSE            68-MSE                              105-MSE                                 
                                     29-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

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