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(-) Description

Title :  STREPTOMYCES GLOBISPORUS C-1027 9-MEMBERED ENEDIYNE CONSERVED PROTEIN SGCE6
 
Authors :  Y. Kim, L. Bigelow, S. Clancy, J. Babnigg, C. A. Bingman, R. Yennamalli, J. R. Lohman, M. Ma, B. Shen, G. N. Phillips Jr. , A. Joachimiak, Midwes For Structural Genomics (Mcsg), Enzyme Discovery For Natural Biosynthesis (Natpro)
Date :  27 Nov 12  (Deposition) - 12 Dec 12  (Release) - 07 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Enzyme Discovery For Natural Product Biosynthesis, Natpro, Alpha-Beta Sandwich, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Huang, C. Y. Chang, J. R. Lohman, J. D. Rudolf, Y. Kim, C. Chang, D. Yang, M. Ma, X. Yan, I. Crnovcic, L. Bigelow, S. Clancy, C. A. Bingman R. M. Yennamalli, G. Babnigg, A. Joachimiak, G. N. Phillips, B. Shen
Crystal Structure Of Sgcj, An Ntf2-Like Superfamily Protein Involved In Biosynthesis Of The Nine-Membered Enediyne Antitumor Antibiotic C-1027.
J Antibiot (Tokyo) V. 69 731 2016
PubMed-ID: 27406907  |  Reference-DOI: 10.1038/JA.2016.88

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN SGCJ
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG57
    Expression System Strain: BL21 GOLD
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: SGCJ
    Organism Scientific: STREPTOMYCES GLOBISPORUS
    Organism Taxid: 1172567
    Strain: C-1027

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 10)

Asymmetric/Biological Unit (6, 10)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2CIT2Ligand/IonCITRIC ACID
3GOL1Ligand/IonGLYCEROL
4MSE4Mod. Amino AcidSELENOMETHIONINE
5PG41Ligand/IonTETRAETHYLENE GLYCOL
6PO41Ligand/IonPHOSPHATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:54 , THR A:62 , HIS A:63 , ALA A:66 , HOH A:305 , HOH A:336 , HOH A:349 , HOH A:410BINDING SITE FOR RESIDUE CIT A 201
2AC2SOFTWARETRP A:29 , TYR A:72 , VAL A:77 , ILE A:78 , THR A:96 , VAL A:114 , TRP A:118 , TYR A:132 , ASN A:134 , HOH A:341 , HOH A:342 , HOH A:347BINDING SITE FOR RESIDUE PG4 A 202
3AC3SOFTWAREALA A:84 , HOH A:373BINDING SITE FOR RESIDUE GOL A 203
4AC4SOFTWAREASP A:89 , GLU A:122 , HOH A:309 , HOH A:329 , HOH A:393BINDING SITE FOR RESIDUE PO4 A 204
5AC5SOFTWAREARG B:54 , THR B:62 , HIS B:63 , ALA B:66 , HOH B:304 , HOH B:330 , HOH B:344 , HOH B:345 , HOH B:346BINDING SITE FOR RESIDUE CIT B 201
6AC6SOFTWARETRP B:29 , TYR B:72 , VAL B:77 , ILE B:78 , GLY B:79 , THR B:96 , VAL B:114 , TRP B:118 , TYR B:132 , ASN B:134 , HOH B:328 , HOH B:352 , HOH B:358BINDING SITE FOR RESIDUE 1PE B 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4I4K)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4I4K)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4I4K)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4I4K)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:138
                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh.eeeeeeeee..eeeehhhhhhhhhhhhhhh.....eeeeeeeeeeeee..eeeeeeeeeee.......hhh.eeeeeeeeeee..eeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4i4k A   3 STDSITSAPDAALAAVAALPARIVAAWADHDADRFADVFAEDGTmILPGLFRKGRENIRTHmAAAFAGPYKGTRVIGSPIDARLLGDGIALLITEGGILAPGETEASGDGAVRASWLAVEQDGQWRLAAYQNSPRGND 140
                                    12        22        32        42    |   52        62 |      72        82        92       102       112       122       132        
                                                                       47-MSE           64-MSE                                                                        


Chain B from PDB  Type:PROTEIN  Length:131
                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhh.hhhhhhhheeeeeeeee..eeeehhhhhhhhhhhhhhh.....eeeeeeeeeeeee..eeeeeeeeeee.......hhh.eeeeeeeeeee..eeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i4k B  10 APDAALAAVAALPARIVAAWADHDADRFADVFAEDGTmILPGLFRKGRENIRTHmAAAFAGPYKGTRVIGSPIDARLLGDGIALLITEGGILAPGETEASGDGAVRASWLAVEQDGQWRLAAYQNSPRGND 140
                                    19        29        39       |49        59    |   69        79        89        99       109       119       129       139 
                                                                47-MSE           64-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4I4K)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4I4K)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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4ovm