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(-) Description

Title :  THE CRYSTAL STRUCTURE OF V84D MUTANT OF S. SOLFATARICUS ACYLPHOSPHATASE
 
Authors :  M. De Rosa, M. Bolognesi, S. Ricagno
Date :  21 Jan 14  (Deposition) - 04 Jun 14  (Release) - 01 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.38
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Native-Like Aggregation, Amyloid Aggregation, Acylphosphatase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. De Rosa, F. Bemporad, S. Pellegrino, F. Chiti, M. Bolognesi, S. Ricagno
Edge Strand Engineering Prevents Native-Like Aggregation In Sulfolobus Solfataricus Acylphosphatase.
Febs J. V. 281 4072 2014
PubMed-ID: 24893801  |  Reference-DOI: 10.1111/FEBS.12861

(-) Compounds

Molecule 1 - ACYLPHOSPHATASE
    Chains: A, B
    EC Number: 3.6.1.7
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ACYP, SSO0887
    Mutation: YES
    Organism Scientific: SULFOLOBUS SOLFATARICUS
    Organism Taxid: 273057
    Strain: ATCC 35092 / DSM 1617 / JCM 11322 / P2
    Synonym: ACYLPHOSPHATE PHOSPHOHYDROLASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2PO42Ligand/IonPHOSPHATE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL
2PO41Ligand/IonPHOSPHATE ION
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2PO41Ligand/IonPHOSPHATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:24 , GLN A:25 , GLY A:26 , VAL A:27 , GLY A:28 , PHE A:29 , ARG A:30 , ASN A:48 , HOH A:303 , HOH A:306 , HOH A:425BINDING SITE FOR RESIDUE PO4 A 201
2AC2SOFTWARESER A:66 , LEU A:69 , PHE A:88 , HOH A:307 , SER B:66 , LEU B:69 , PHE B:88 , HOH B:304 , HOH B:325 , HOH B:362BINDING SITE FOR RESIDUE GOL B 201
3AC3SOFTWAREVAL B:24 , GLN B:25 , GLY B:26 , VAL B:27 , GLY B:28 , PHE B:29 , ARG B:30 , ASN B:48 , HOH B:322 , HOH B:384BINDING SITE FOR RESIDUE PO4 B 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OJG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4OJG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OJG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OJG)

(-) Exons   (0, 0)

(no "Exon" information available for 4OJG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:91
                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee....hhhhhhhhhhhhh..eeeeee.....eeeeeeeehhhhhhhhhhhhhh....eeeeeeeeee........eeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                 4ojg A  11 EMLKRMYARVYGLVQGVGFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYEEALSKLLERIKQGPPAAEVEKDDYSFSEYKGEFEDFETY 101
                                    20        30        40        50        60        70        80        90       100 


Chain B from PDB  Type:PROTEIN  Length:91
                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee....hhhhhhhhhhhhhh.eeeeee.....eeeeeeeehhhhhhhhhhhhhh....eeeeeeeeee........eeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                 4ojg B  11 EMLKRMYARVYGLVQGVGFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYEEALSKLLERIKQGPPAAEVEKDDYSFSEYKGEFEDFETY 101
                                    20        30        40        50        60        70        80        90       100
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OJG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OJG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OJG)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ACYP_SULSO | Q97ZL0: 1y9o 2bjd 2bje 4oix 4oj1 4oj3 4ojh

(-) Related Entries Specified in the PDB File

4oix W.T., TRUNCATED FORM (DELTAN11)
4oj1 W.T., TRUNCATED FORM (DELTAN11)
4oj3 MUTANT V84P
4ojh