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(-) Description

Title :  THE CRYSTAL STRUCTURE OF V84P MUTANT OF S. SOLFATARICUS ACYLPHOSPHATASE
 
Authors :  M. De Rosa, M. Bolognesi, S. Ricagno
Date :  20 Jan 14  (Deposition) - 04 Jun 14  (Release) - 01 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Native-Like Aggregation, Amyloid Aggregation, Hydrolase, Acylphosphatase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. De Rosa, F. Bemporad, S. Pellegrino, F. Chiti, M. Bolognesi, S. Ricagno
Edge Strand Engineering Prevents Native-Like Aggregation In Sulfolobus Solfataricus Acylphosphatase.
Febs J. V. 281 4072 2014
PubMed-ID: 24893801  |  Reference-DOI: 10.1111/FEBS.12861

(-) Compounds

Molecule 1 - ACYLPHOSPHATASE
    Chains: A, B
    EC Number: 3.6.1.7
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-2T
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: ACYP, SSO0887
    Mutation: YES
    Organism Scientific: SULFOLOBUS SOLFATARICUS
    Organism Taxid: 273057
    Strain: ATCC 35092 / DSM 1617 / JCM 11322 / P2
    Synonym: ACYLPHOSPHATE PHOSPHOHYDROLASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric Unit (2, 6)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2SO44Ligand/IonSULFATE ION
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2SO42Ligand/IonSULFATE ION
Biological Unit 2 (2, 3)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2SO42Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:28 , PHE A:29 , ARG A:30 , LYS A:31 , HOH A:301 , HOH A:307BINDING SITE FOR RESIDUE SO4 A 201
2AC2SOFTWAREARG A:30 , ARG A:39 , ASN A:48 , ARG A:71 , HOH A:316BINDING SITE FOR RESIDUE SO4 A 202
3AC3SOFTWAREGLY A:22 , LEU A:23 , VAL A:24 , GLN A:25 , ILE A:35 , ILE A:38 , GLY A:52 , GLU B:80 , GLU B:82BINDING SITE FOR RESIDUE GOL A 203
4AC4SOFTWAREGLY B:28 , PHE B:29 , ARG B:30 , LYS B:31 , HOH B:307 , HOH B:311 , HOH B:312 , HOH B:315 , HOH B:324BINDING SITE FOR RESIDUE SO4 B 201
5AC5SOFTWAREARG B:30 , ARG B:39 , ASN B:48 , ARG B:71 , HOH B:326BINDING SITE FOR RESIDUE SO4 B 202
6AC6SOFTWAREGLU A:80 , GLU A:82 , GLY B:22 , LEU B:23 , VAL B:24 , GLN B:25 , ILE B:35 , ILE B:38 , GLY B:52BINDING SITE FOR RESIDUE GOL B 203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OJ3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4OJ3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OJ3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OJ3)

(-) Exons   (0, 0)

(no "Exon" information available for 4OJ3)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:90
                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeee....hhhhhhhhhhhhh..eeeeee.....eeeeeeeehhhhhhhhhhhhhh....eeeeeeeeee........eeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                 4oj3 A  12 MLKRMYARVYGLVQGVGFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYEEALSKLLERIKQGPPAAEVEKPDYSFSEYKGEFEDFETY 101
                                    21        31        41        51        61        71        81        91       101


Chain B from PDB  Type:PROTEIN  Length:95
                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhh.eeeeeeeeeee....hhhhhhhhhhhhh..eeeeee.....eeeeeeeehhhhhhhhhhhhhh....eeeeeeeeee........eeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 4oj3 B   7 TEVFEMLKRMYARVYGLVQGVGFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYEEALSKLLERIKQGPPAAEVEKPDYSFSEYKGEFEDFETY 101
                                    16        26        36        46        56        66        76        86        96
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OJ3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OJ3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OJ3)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ACYP_SULSO | Q97ZL0: 1y9o 2bjd 2bje 4oix 4oj1 4ojg 4ojh

(-) Related Entries Specified in the PDB File

4oix 4oj1