Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  (QUASI-)RACEMIC X-RAY CRYSTAL STRUCTURE OF GLYCOSYLATED CHEMOKINE SER-CCL1.
 
Authors :  R. Okamoto, K. Mandal, M. R. Sawaya, Y. Kajihara, T. O. Yeates, S. B. H. Ke
Date :  19 Jan 14  (Deposition) - 07 May 14  (Release) - 21 May 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Chemical Protein Synthesis, Quasi-Racemic Protein Crystallography, Glycoprotein, Chemokine, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Okamoto, K. Mandal, M. R. Sawaya, Y. Kajihara, T. O. Yeates, S. B. Ken
(Quasi-)Racemic X-Ray Structures Of Glycosylated And Non-Glycosylated Forms Of The Chemokine Ser-Ccl1 Prepared B Total Chemical Synthesis.
Angew. Chem. Int. Ed. Engl. V. 53 5194 2014
PubMed-ID: 24692304  |  Reference-DOI: 10.1002/ANIE.201400679

(-) Compounds

Molecule 1 - C-C MOTIF CHEMOKINE 1
    Chains: A, B
    Engineered: YES
    Fragment: UNP RESIDUES 23-96
    Synonym: SMALL-INDUCIBLE CYTOKINE A1, T LYMPHOCYTE-SECRETED PROTEIN I-309
    Synthetic: YES
 
Molecule 2 - D-SER-CCL1
    Chains: C, D
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Other Details: CHEMICAL SYNTHESIS
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (22, 167)

Asymmetric Unit (22, 167)
No.NameCountTypeFull Name
1CIT2Ligand/IonCITRIC ACID
2DAL8Mod. Amino AcidD-ALANINE
3DAR16Mod. Amino AcidD-ARGININE
4DAS2Mod. Amino AcidD-ASPARTIC ACID
5DCY12Mod. Amino AcidD-CYSTEINE
6DGL8Mod. Amino AcidD-GLUTAMIC ACID
7DGN6Mod. Amino AcidD-GLUTAMINE
8DHI4Mod. Amino AcidD-HISTIDINE
9DIL8Mod. Amino AcidD-ISOLEUCINE
10DLE12Mod. Amino AcidD-LEUCINE
11DLY10Mod. Amino AcidD-LYSINE
12DPN8Mod. Amino AcidD-PHENYLALANINE
13DPR6Mod. Amino AcidD-PROLINE
14DSG4Mod. Amino AcidD-ASPARAGINE
15DSN14Mod. Amino AcidD-SERINE
16DTH4Mod. Amino AcidD-THREONINE
17DTR2Mod. Amino AcidD-TRYPTOPHAN
18DTY2Mod. Amino AcidD-TYROSINE
19DVA6Mod. Amino AcidD-VALINE
20MED4Mod. Amino AcidD-METHIONINE
21NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
22SO427Ligand/IonSULFATE ION
Biological Unit 1 (2, 17)
No.NameCountTypeFull Name
1CIT-1Ligand/IonCITRIC ACID
2DAL-1Mod. Amino AcidD-ALANINE
3DAR-1Mod. Amino AcidD-ARGININE
4DAS-1Mod. Amino AcidD-ASPARTIC ACID
5DCY-1Mod. Amino AcidD-CYSTEINE
6DGL-1Mod. Amino AcidD-GLUTAMIC ACID
7DGN-1Mod. Amino AcidD-GLUTAMINE
8DHI-1Mod. Amino AcidD-HISTIDINE
9DIL-1Mod. Amino AcidD-ISOLEUCINE
10DLE-1Mod. Amino AcidD-LEUCINE
11DLY-1Mod. Amino AcidD-LYSINE
12DPN-1Mod. Amino AcidD-PHENYLALANINE
13DPR-1Mod. Amino AcidD-PROLINE
14DSG-1Mod. Amino AcidD-ASPARAGINE
15DSN-1Mod. Amino AcidD-SERINE
16DTH-1Mod. Amino AcidD-THREONINE
17DTR-1Mod. Amino AcidD-TRYPTOPHAN
18DTY-1Mod. Amino AcidD-TYROSINE
19DVA-1Mod. Amino AcidD-VALINE
20MED-1Mod. Amino AcidD-METHIONINE
21NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
22SO415Ligand/IonSULFATE ION
Biological Unit 2 (21, 150)
No.NameCountTypeFull Name
1CIT2Ligand/IonCITRIC ACID
2DAL8Mod. Amino AcidD-ALANINE
3DAR16Mod. Amino AcidD-ARGININE
4DAS2Mod. Amino AcidD-ASPARTIC ACID
5DCY12Mod. Amino AcidD-CYSTEINE
6DGL8Mod. Amino AcidD-GLUTAMIC ACID
7DGN6Mod. Amino AcidD-GLUTAMINE
8DHI4Mod. Amino AcidD-HISTIDINE
9DIL8Mod. Amino AcidD-ISOLEUCINE
10DLE12Mod. Amino AcidD-LEUCINE
11DLY10Mod. Amino AcidD-LYSINE
12DPN8Mod. Amino AcidD-PHENYLALANINE
13DPR6Mod. Amino AcidD-PROLINE
14DSG4Mod. Amino AcidD-ASPARAGINE
15DSN14Mod. Amino AcidD-SERINE
16DTH4Mod. Amino AcidD-THREONINE
17DTR2Mod. Amino AcidD-TRYPTOPHAN
18DTY2Mod. Amino AcidD-TYROSINE
19DVA6Mod. Amino AcidD-VALINE
20MED4Mod. Amino AcidD-METHIONINE
21NAG-1Ligand/IonN-ACETYL-D-GLUCOSAMINE
22SO412Ligand/IonSULFATE ION

(-) Sites  (31, 31)

Asymmetric Unit (31, 31)
No.NameEvidenceResiduesDescription
01OC3SOFTWARESER A:32 , SER A:33 , HOH A:208 , HOH A:229BINDING SITE FOR RESIDUE SO4 A 102
02OC4SOFTWAREVAL A:56 , GLY A:57 , TRP A:58 , ARG A:61 , HOH A:210 , HOH A:219 , DSN D:36BINDING SITE FOR RESIDUE SO4 A 103
03OC5SOFTWAREPHE A:8 , ARG A:10 , PHE B:8 , ARG B:10BINDING SITE FOR RESIDUE SO4 A 104
04OC6SOFTWARETYR A:28 , ARG A:67 , HIS A:68BINDING SITE FOR RESIDUE SO4 A 105
05OC7SOFTWAREGLU A:19 , ARG A:61 , HOH A:226BINDING SITE FOR RESIDUE SO4 A 106
06OC8SOFTWAREPRO A:7 , HOH A:208 , HOH A:212 , SER B:14BINDING SITE FOR RESIDUE SO4 A 107
07OC9SOFTWAREARG A:23BINDING SITE FOR RESIDUE SO4 A 108
08PC1SOFTWARESER A:14 , PRO B:7 , HOH B:205 , HOH B:210BINDING SITE FOR RESIDUE SO4 A 109
09PC2SOFTWAREDAR C:67 , DAR D:67BINDING SITE FOR RESIDUE SO4 B 102
10PC3SOFTWAREARG B:10 , PRO B:70 , SER B:71 , LYS B:72 , HOH B:230 , DAR D:67BINDING SITE FOR RESIDUE SO4 B 103
11PC4SOFTWARESER B:32 , SER B:33 , HOH B:205 , HOH B:214 , HOH B:215 , HOH B:223BINDING SITE FOR RESIDUE SO4 B 104
12PC5SOFTWAREVAL B:56 , GLY B:57 , TRP B:58 , ARG B:61 , DSN C:36BINDING SITE FOR RESIDUE SO4 B 105
13PC6SOFTWARETYR B:28 , ARG B:67 , HIS B:68BINDING SITE FOR RESIDUE SO4 B 106
14PC7SOFTWAREGLU B:19 , ARG B:61 , HOH B:220 , HOH B:227BINDING SITE FOR RESIDUE SO4 B 107
15PC8SOFTWARELEU B:22 , ARG B:23 , HOH B:220BINDING SITE FOR RESIDUE SO4 B 108
16PC9SOFTWAREARG A:67 , ARG B:67 , DLY C:72BINDING SITE FOR RESIDUE SO4 C 101
17QC1SOFTWAREDSN C:32 , DSN C:33 , HOH C:216 , HOH C:223BINDING SITE FOR RESIDUE SO4 C 102
18QC2SOFTWAREARG A:67 , DSN C:71 , DLY C:72 , HOH C:221BINDING SITE FOR RESIDUE SO4 C 103
19QC3SOFTWAREDGL C:19 , DAR C:23 , DAR C:61 , DHI C:62BINDING SITE FOR RESIDUE SO4 C 104
20QC4SOFTWAREDAR C:10 , DAR C:29 , DSG C:30BINDING SITE FOR RESIDUE SO4 C 105
21QC5SOFTWAREARG A:10 , ARG A:29 , SER A:71 , LYS A:72 , DAR C:67BINDING SITE FOR RESIDUE SO4 C 106
22QC6SOFTWAREDAR C:67 , DHI C:68BINDING SITE FOR RESIDUE SO4 C 107
23QC7SOFTWARESER B:33 , DVA C:56 , GLY C:57 , DTR C:58 , DAR C:61 , HOH C:214BINDING SITE FOR RESIDUE CIT C 108
24QC8SOFTWAREARG B:67 , DSN D:71 , DLY D:72 , SO4 D:102BINDING SITE FOR RESIDUE SO4 D 101
25QC9SOFTWAREDPN C:8 , DAR D:29 , DGL D:49 , SO4 D:101 , HOH D:213BINDING SITE FOR RESIDUE SO4 D 102
26RC1SOFTWAREDAR D:10 , DAR D:29 , DSG D:30 , HOH D:217BINDING SITE FOR RESIDUE SO4 D 103
27RC2SOFTWAREDGL D:19 , DAR D:61 , DHI D:62BINDING SITE FOR RESIDUE SO4 D 104
28RC3SOFTWAREDAR D:67 , DHI D:68BINDING SITE FOR RESIDUE SO4 D 105
29RC4SOFTWARESER A:33 , DGL D:19 , DVA D:56 , GLY D:57 , DTR D:58 , DAR D:61BINDING SITE FOR RESIDUE CIT D 106
30RC5SOFTWAREASN A:30BINDING SITE FOR MONO-SACCHARIDE NAG A 101 BOUND TO ASN A 30
31RC6SOFTWAREASN B:30BINDING SITE FOR MONO-SACCHARIDE NAG B 101 BOUND TO ASN B 30

(-) SS Bonds  (12, 12)

Asymmetric Unit
No.Residues
1A:11 -A:35
2A:12 -A:51
3A:27 -A:69
4B:11 -B:35
5B:12 -B:51
6B:27 -B:69
7C:11 -C:35
8C:12 -C:51
9C:27 -C:69
10D:11 -D:35
11D:12 -D:51
12D:27 -D:69

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4OIK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OIK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OIK)

(-) Exons   (0, 0)

(no "Exon" information available for 4OIK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:73
                                                                                                        
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eee.........hhh.eeeeee........eeeeee....eeeee..hhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                  4oik A  1 SKSMQVPFSRCCFSFAEQEIPLRAILCYRNTSSICSNEGLIFKLKRGKEACALDTVGWVQRHRKMLRHCPSKR 73
                                    10        20        30        40        50        60        70   


Chain B from PDB  Type:PROTEIN  Length:73
                                                                                                        
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eee.........hhh.eeeeee........eeeeee....eeeee..hhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                  4oik B  1 SKSMQVPFSRCCFSFAEQEIPLRAILCYRNTSSICSNEGLIFKLKRGKEACALDTVGWVQRHRKMLRHCPSKR 73
                                    10        20        30        40        50        60        70   


Chain C from PDB  Type:PROTEIN  Length:71
                                                                                                      
               SCOP domains ----------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee.........hhh.eeeeee.hhhhh..eeeeee....eeeee..hhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  4oik C  3 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGxxxxxxxGxxxxxxxxxGxxxxxxxxxxxxxxxx 73
                            ||||||||12||||||||22||||||||32|||||| |42|||| |||52|||| |||62||||||||72|
                            3-DSN|||12-DCY|||21-DPR|||30-DSG|||| 41-DIL| ||51-DCY| ||61-DAR|||70-DPR
                             4-MED|||13-DPN|||22-DLE|||31-DTH||| |42-DPN |||52-DAL |||62-DHI|||71-DSN
                              5-DGN|| 14-DSN|| 23-DAR|| 32-DSN|| | 43-DLY||| 53-DLE||| 63-DAR|| 72-DLY
                               6-DVA|  15-DPN|  24-DAL|  33-DSN| |  44-DLE||  54-DAS||  64-DLY|  73-DAR
                                7-DPR   16-DAL   25-DIL   34-DIL |   45-DLY|   55-DTH|   65-MED    
                                 8-DPN   17-DGL   26-DLE   35-DCY|    46-DAR    56-DVA    66-DLE   
                                  9-DSN   18-DGN   27-DCY   36-DSN      48-DLY    58-DTR   67-DAR  
                                  10-DAR   19-DGL   28-DTY   37-DSG      49-DGL    59-DVA   68-DHI 
                                   11-DCY   20-DIL   29-DAR   38-DGL      50-DAL    60-DGN   69-DCY


Chain D from PDB  Type:PROTEIN  Length:71
                                                                                                      
               SCOP domains ----------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee.........hhh.eeeeee.hhhhh..eeeeee....eeeee..hhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  4oik D  3 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGxxxxxxxGxxxxxxxxxGxxxxxxxxxxxxxxxx 73
                            ||||||||12||||||||22||||||||32|||||| |42|||| |||52|||| |||62||||||||72|
                            |||||||11-DCY|||20-DIL|||29-DAR|||38-DGL|||| 49-DGL||| 59-DVA|||68-DHI|
                            3-DSN|||12-DCY|||21-DPR|||30-DSG||| 40-DLE|| |50-DAL|| |60-DGN|||69-DCY
                             4-MED|| 13-DPN|| 22-DLE|| 31-DTH||  41-DIL| | 51-DCY| | 61-DAR|| 70-DPR
                              5-DGN|  14-DSN|  23-DAR|  32-DSN|   42-DPN |  52-DAL |  62-DHI|  71-DSN
                               6-DVA   15-DPN   24-DAL   33-DSN    43-DLY|   53-DLE|   63-DAR   72-DLY
                                7-DPR   16-DAL   25-DIL   34-DIL    44-DLE    54-DAS    64-DLY   73-DAR
                                 8-DPN   17-DGL   26-DLE   35-DCY    45-DLY    55-DTH    65-MED    
                                  9-DSN   18-DGN   27-DCY   36-DSN    46-DAR    56-DVA    66-DLE   
                                  10-DAR   19-DGL   28-DTY   37-DSG     48-DLY    58-DTR   67-DAR
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OIK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OIK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OIK)

(-) Gene Ontology  (24, 24)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CIT  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DAL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DAR  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DAS  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DCY  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DGL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DGN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DHI  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DIL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DLE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DLY  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DPN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DPR  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DSG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DSN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DTH  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DTR  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DTY  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DVA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MED  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NAG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    OC3  [ RasMol ]  +environment [ RasMol ]
    OC4  [ RasMol ]  +environment [ RasMol ]
    OC5  [ RasMol ]  +environment [ RasMol ]
    OC6  [ RasMol ]  +environment [ RasMol ]
    OC7  [ RasMol ]  +environment [ RasMol ]
    OC8  [ RasMol ]  +environment [ RasMol ]
    OC9  [ RasMol ]  +environment [ RasMol ]
    PC1  [ RasMol ]  +environment [ RasMol ]
    PC2  [ RasMol ]  +environment [ RasMol ]
    PC3  [ RasMol ]  +environment [ RasMol ]
    PC4  [ RasMol ]  +environment [ RasMol ]
    PC5  [ RasMol ]  +environment [ RasMol ]
    PC6  [ RasMol ]  +environment [ RasMol ]
    PC7  [ RasMol ]  +environment [ RasMol ]
    PC8  [ RasMol ]  +environment [ RasMol ]
    PC9  [ RasMol ]  +environment [ RasMol ]
    QC1  [ RasMol ]  +environment [ RasMol ]
    QC2  [ RasMol ]  +environment [ RasMol ]
    QC3  [ RasMol ]  +environment [ RasMol ]
    QC4  [ RasMol ]  +environment [ RasMol ]
    QC5  [ RasMol ]  +environment [ RasMol ]
    QC6  [ RasMol ]  +environment [ RasMol ]
    QC7  [ RasMol ]  +environment [ RasMol ]
    QC8  [ RasMol ]  +environment [ RasMol ]
    QC9  [ RasMol ]  +environment [ RasMol ]
    RC1  [ RasMol ]  +environment [ RasMol ]
    RC2  [ RasMol ]  +environment [ RasMol ]
    RC3  [ RasMol ]  +environment [ RasMol ]
    RC4  [ RasMol ]  +environment [ RasMol ]
    RC5  [ RasMol ]  +environment [ RasMol ]
    RC6  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4oik)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4oik
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  CCL1_HUMAN | P22362
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  CCL1_HUMAN | P22362
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CCL1_HUMAN | P22362: 1el0 4oij

(-) Related Entries Specified in the PDB File

4oij