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4OIK
Biol. Unit 1
Info
Asym.Unit (124 KB)
Biol.Unit 1 (59 KB)
Biol.Unit 2 (56 KB)
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(1)
Title
:
(QUASI-)RACEMIC X-RAY CRYSTAL STRUCTURE OF GLYCOSYLATED CHEMOKINE SER-CCL1.
Authors
:
R. Okamoto, K. Mandal, M. R. Sawaya, Y. Kajihara, T. O. Yeates, S. B. H. Ke
Date
:
19 Jan 14 (Deposition) - 07 May 14 (Release) - 21 May 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Chemical Protein Synthesis, Quasi-Racemic Protein Crystallography, Glycoprotein, Chemokine, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Okamoto, K. Mandal, M. R. Sawaya, Y. Kajihara, T. O. Yeates, S. B. Ken
(Quasi-)Racemic X-Ray Structures Of Glycosylated And Non-Glycosylated Forms Of The Chemokine Ser-Ccl1 Prepared B Total Chemical Synthesis.
Angew. Chem. Int. Ed. Engl. V. 53 5194 2014
[
close entry info
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Hetero Components
(2, 17)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
1b: CITRIC ACID (CITb)
2a: D-ALANINE (DALa)
2b: D-ALANINE (DALb)
2c: D-ALANINE (DALc)
2d: D-ALANINE (DALd)
2e: D-ALANINE (DALe)
2f: D-ALANINE (DALf)
2g: D-ALANINE (DALg)
2h: D-ALANINE (DALh)
3a: D-ARGININE (DARa)
3b: D-ARGININE (DARb)
3c: D-ARGININE (DARc)
3d: D-ARGININE (DARd)
3e: D-ARGININE (DARe)
3f: D-ARGININE (DARf)
3g: D-ARGININE (DARg)
3h: D-ARGININE (DARh)
3i: D-ARGININE (DARi)
3j: D-ARGININE (DARj)
3k: D-ARGININE (DARk)
3l: D-ARGININE (DARl)
3m: D-ARGININE (DARm)
3n: D-ARGININE (DARn)
3o: D-ARGININE (DARo)
3p: D-ARGININE (DARp)
4a: D-ASPARTIC ACID (DASa)
4b: D-ASPARTIC ACID (DASb)
5a: D-CYSTEINE (DCYa)
5b: D-CYSTEINE (DCYb)
5c: D-CYSTEINE (DCYc)
5d: D-CYSTEINE (DCYd)
5e: D-CYSTEINE (DCYe)
5f: D-CYSTEINE (DCYf)
5g: D-CYSTEINE (DCYg)
5h: D-CYSTEINE (DCYh)
5i: D-CYSTEINE (DCYi)
5j: D-CYSTEINE (DCYj)
5k: D-CYSTEINE (DCYk)
5l: D-CYSTEINE (DCYl)
6a: D-GLUTAMIC ACID (DGLa)
6b: D-GLUTAMIC ACID (DGLb)
6c: D-GLUTAMIC ACID (DGLc)
6d: D-GLUTAMIC ACID (DGLd)
6e: D-GLUTAMIC ACID (DGLe)
6f: D-GLUTAMIC ACID (DGLf)
6g: D-GLUTAMIC ACID (DGLg)
6h: D-GLUTAMIC ACID (DGLh)
7a: D-GLUTAMINE (DGNa)
7b: D-GLUTAMINE (DGNb)
7c: D-GLUTAMINE (DGNc)
7d: D-GLUTAMINE (DGNd)
7e: D-GLUTAMINE (DGNe)
7f: D-GLUTAMINE (DGNf)
8a: D-HISTIDINE (DHIa)
8b: D-HISTIDINE (DHIb)
8c: D-HISTIDINE (DHIc)
8d: D-HISTIDINE (DHId)
9a: D-ISOLEUCINE (DILa)
9b: D-ISOLEUCINE (DILb)
9c: D-ISOLEUCINE (DILc)
9d: D-ISOLEUCINE (DILd)
9e: D-ISOLEUCINE (DILe)
9f: D-ISOLEUCINE (DILf)
9g: D-ISOLEUCINE (DILg)
9h: D-ISOLEUCINE (DILh)
10a: D-LEUCINE (DLEa)
10b: D-LEUCINE (DLEb)
10c: D-LEUCINE (DLEc)
10d: D-LEUCINE (DLEd)
10e: D-LEUCINE (DLEe)
10f: D-LEUCINE (DLEf)
10g: D-LEUCINE (DLEg)
10h: D-LEUCINE (DLEh)
10i: D-LEUCINE (DLEi)
10j: D-LEUCINE (DLEj)
10k: D-LEUCINE (DLEk)
10l: D-LEUCINE (DLEl)
11a: D-LYSINE (DLYa)
11b: D-LYSINE (DLYb)
11c: D-LYSINE (DLYc)
11d: D-LYSINE (DLYd)
11e: D-LYSINE (DLYe)
11f: D-LYSINE (DLYf)
11g: D-LYSINE (DLYg)
11h: D-LYSINE (DLYh)
11i: D-LYSINE (DLYi)
11j: D-LYSINE (DLYj)
12a: D-PHENYLALANINE (DPNa)
12b: D-PHENYLALANINE (DPNb)
12c: D-PHENYLALANINE (DPNc)
12d: D-PHENYLALANINE (DPNd)
12e: D-PHENYLALANINE (DPNe)
12f: D-PHENYLALANINE (DPNf)
12g: D-PHENYLALANINE (DPNg)
12h: D-PHENYLALANINE (DPNh)
13a: D-PROLINE (DPRa)
13b: D-PROLINE (DPRb)
13c: D-PROLINE (DPRc)
13d: D-PROLINE (DPRd)
13e: D-PROLINE (DPRe)
13f: D-PROLINE (DPRf)
14a: D-ASPARAGINE (DSGa)
14b: D-ASPARAGINE (DSGb)
14c: D-ASPARAGINE (DSGc)
14d: D-ASPARAGINE (DSGd)
15a: D-SERINE (DSNa)
15b: D-SERINE (DSNb)
15c: D-SERINE (DSNc)
15d: D-SERINE (DSNd)
15e: D-SERINE (DSNe)
15f: D-SERINE (DSNf)
15g: D-SERINE (DSNg)
15h: D-SERINE (DSNh)
15i: D-SERINE (DSNi)
15j: D-SERINE (DSNj)
15k: D-SERINE (DSNk)
15l: D-SERINE (DSNl)
15m: D-SERINE (DSNm)
15n: D-SERINE (DSNn)
16a: D-THREONINE (DTHa)
16b: D-THREONINE (DTHb)
16c: D-THREONINE (DTHc)
16d: D-THREONINE (DTHd)
17a: D-TRYPTOPHAN (DTRa)
17b: D-TRYPTOPHAN (DTRb)
18a: D-TYROSINE (DTYa)
18b: D-TYROSINE (DTYb)
19a: D-VALINE (DVAa)
19b: D-VALINE (DVAb)
19c: D-VALINE (DVAc)
19d: D-VALINE (DVAd)
19e: D-VALINE (DVAe)
19f: D-VALINE (DVAf)
20a: D-METHIONINE (MEDa)
20b: D-METHIONINE (MEDb)
20c: D-METHIONINE (MEDc)
20d: D-METHIONINE (MEDd)
21a: N-ACETYL-D-GLUCOSAMINE (NAGa)
21b: N-ACETYL-D-GLUCOSAMINE (NAGb)
22a: SULFATE ION (SO4a)
22aa: SULFATE ION (SO4aa)
22b: SULFATE ION (SO4b)
22c: SULFATE ION (SO4c)
22d: SULFATE ION (SO4d)
22e: SULFATE ION (SO4e)
22f: SULFATE ION (SO4f)
22g: SULFATE ION (SO4g)
22h: SULFATE ION (SO4h)
22i: SULFATE ION (SO4i)
22j: SULFATE ION (SO4j)
22k: SULFATE ION (SO4k)
22l: SULFATE ION (SO4l)
22m: SULFATE ION (SO4m)
22n: SULFATE ION (SO4n)
22o: SULFATE ION (SO4o)
22p: SULFATE ION (SO4p)
22q: SULFATE ION (SO4q)
22r: SULFATE ION (SO4r)
22s: SULFATE ION (SO4s)
22t: SULFATE ION (SO4t)
22u: SULFATE ION (SO4u)
22v: SULFATE ION (SO4v)
22w: SULFATE ION (SO4w)
22x: SULFATE ION (SO4x)
22y: SULFATE ION (SO4y)
22z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CIT
-1
Ligand/Ion
CITRIC ACID
2
DAL
-1
Mod. Amino Acid
D-ALANINE
3
DAR
-1
Mod. Amino Acid
D-ARGININE
4
DAS
-1
Mod. Amino Acid
D-ASPARTIC ACID
5
DCY
-1
Mod. Amino Acid
D-CYSTEINE
6
DGL
-1
Mod. Amino Acid
D-GLUTAMIC ACID
7
DGN
-1
Mod. Amino Acid
D-GLUTAMINE
8
DHI
-1
Mod. Amino Acid
D-HISTIDINE
9
DIL
-1
Mod. Amino Acid
D-ISOLEUCINE
10
DLE
-1
Mod. Amino Acid
D-LEUCINE
11
DLY
-1
Mod. Amino Acid
D-LYSINE
12
DPN
-1
Mod. Amino Acid
D-PHENYLALANINE
13
DPR
-1
Mod. Amino Acid
D-PROLINE
14
DSG
-1
Mod. Amino Acid
D-ASPARAGINE
15
DSN
-1
Mod. Amino Acid
D-SERINE
16
DTH
-1
Mod. Amino Acid
D-THREONINE
17
DTR
-1
Mod. Amino Acid
D-TRYPTOPHAN
18
DTY
-1
Mod. Amino Acid
D-TYROSINE
19
DVA
-1
Mod. Amino Acid
D-VALINE
20
MED
-1
Mod. Amino Acid
D-METHIONINE
21
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
22
SO4
15
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(22, 22)
Info
All Sites
01: OC3 (SOFTWARE)
02: OC4 (SOFTWARE)
03: OC5 (SOFTWARE)
04: OC6 (SOFTWARE)
05: OC7 (SOFTWARE)
06: OC8 (SOFTWARE)
07: OC9 (SOFTWARE)
08: PC1 (SOFTWARE)
09: PC3 (SOFTWARE)
10: PC4 (SOFTWARE)
11: PC5 (SOFTWARE)
12: PC6 (SOFTWARE)
13: PC7 (SOFTWARE)
14: PC8 (SOFTWARE)
15: PC9 (SOFTWARE)
16: QC2 (SOFTWARE)
17: QC5 (SOFTWARE)
18: QC7 (SOFTWARE)
19: QC8 (SOFTWARE)
20: RC4 (SOFTWARE)
21: RC5 (SOFTWARE)
22: RC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
OC3
SOFTWARE
SER A:32 , SER A:33 , HOH A:208 , HOH A:229
BINDING SITE FOR RESIDUE SO4 A 102
02
OC4
SOFTWARE
VAL A:56 , GLY A:57 , TRP A:58 , ARG A:61 , HOH A:210 , HOH A:219 , DSN D:36
BINDING SITE FOR RESIDUE SO4 A 103
03
OC5
SOFTWARE
PHE A:8 , ARG A:10 , PHE B:8 , ARG B:10
BINDING SITE FOR RESIDUE SO4 A 104
04
OC6
SOFTWARE
TYR A:28 , ARG A:67 , HIS A:68
BINDING SITE FOR RESIDUE SO4 A 105
05
OC7
SOFTWARE
GLU A:19 , ARG A:61 , HOH A:226
BINDING SITE FOR RESIDUE SO4 A 106
06
OC8
SOFTWARE
PRO A:7 , HOH A:208 , HOH A:212 , SER B:14
BINDING SITE FOR RESIDUE SO4 A 107
07
OC9
SOFTWARE
ARG A:23
BINDING SITE FOR RESIDUE SO4 A 108
08
PC1
SOFTWARE
SER A:14 , PRO B:7 , HOH B:205 , HOH B:210
BINDING SITE FOR RESIDUE SO4 A 109
09
PC3
SOFTWARE
ARG B:10 , PRO B:70 , SER B:71 , LYS B:72 , HOH B:230 , DAR D:67
BINDING SITE FOR RESIDUE SO4 B 103
10
PC4
SOFTWARE
SER B:32 , SER B:33 , HOH B:205 , HOH B:214 , HOH B:215 , HOH B:223
BINDING SITE FOR RESIDUE SO4 B 104
11
PC5
SOFTWARE
VAL B:56 , GLY B:57 , TRP B:58 , ARG B:61 , DSN C:36
BINDING SITE FOR RESIDUE SO4 B 105
12
PC6
SOFTWARE
TYR B:28 , ARG B:67 , HIS B:68
BINDING SITE FOR RESIDUE SO4 B 106
13
PC7
SOFTWARE
GLU B:19 , ARG B:61 , HOH B:220 , HOH B:227
BINDING SITE FOR RESIDUE SO4 B 107
14
PC8
SOFTWARE
LEU B:22 , ARG B:23 , HOH B:220
BINDING SITE FOR RESIDUE SO4 B 108
15
PC9
SOFTWARE
ARG A:67 , ARG B:67 , DLY C:72
BINDING SITE FOR RESIDUE SO4 C 101
16
QC2
SOFTWARE
ARG A:67 , DSN C:71 , DLY C:72 , HOH C:221
BINDING SITE FOR RESIDUE SO4 C 103
17
QC5
SOFTWARE
ARG A:10 , ARG A:29 , SER A:71 , LYS A:72 , DAR C:67
BINDING SITE FOR RESIDUE SO4 C 106
18
QC7
SOFTWARE
SER B:33 , DVA C:56 , GLY C:57 , DTR C:58 , DAR C:61 , HOH C:214
BINDING SITE FOR RESIDUE CIT C 108
19
QC8
SOFTWARE
ARG B:67 , DSN D:71 , DLY D:72 , SO4 D:102
BINDING SITE FOR RESIDUE SO4 D 101
20
RC4
SOFTWARE
SER A:33 , DGL D:19 , DVA D:56 , GLY D:57 , DTR D:58 , DAR D:61
BINDING SITE FOR RESIDUE CIT D 106
21
RC5
SOFTWARE
ASN A:30
BINDING SITE FOR MONO-SACCHARIDE NAG A 101 BOUND TO ASN A 30
22
RC6
SOFTWARE
ASN B:30
BINDING SITE FOR MONO-SACCHARIDE NAG B 101 BOUND TO ASN B 30
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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