4OCF - JenaLib

Asymmetric Unit (Jmol Viewer)

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Biological Unit 1 (Jmol Viewer)

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Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE DISULFIDE OXIDOREDUCTASE DSBA (S30XXC33) ACTIVE SITE MUTANT FROM PROTEUS MIRABILIS

Authors :   F. Kurth, J. L. Martin

Date :   09 Jan 14 (Deposition) - 28 May 14 (Release) - 30 Jul 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.98

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Oxidative Folding Protein, Virulence Factor Maturation Protein, Disulfide Oxidoreductase, Thioredoxin, Dsba, Dithiol Exchange, Dsbb, Periplasmic, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   F. Kurth, W. Duprez, L. Premkumar, M. A. Schembri, D. P. Fairlie, J. L. Martin
Crystal Structure Of The Dithiol Oxidase Dsba Enzyme From Proteus Mirabilis Bound Non-Covalently To An Active Site Peptide Ligand.
J. Biol. Chem. V. 289 19810 2014
PubMed-ID: 24831013 | Reference-DOI: 10.1074/JBC.M114.552380

Molecule 1
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)PLYSS
	Expression System Taxid	:	562
	Gene	:	DSBA, PMI2828
	Mutation	:	YES
	Organism Scientific	:	PROTEUS MIRABILIS
	Organism Taxid	:	529507
	Strain	:	HI4320

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 9)

No.	Name	Count	Type	Full Name
1	SCN	9	Ligand/Ion	THIOCYANATE ION

Biological Unit 1 (1, 3)

No.	Name	Count	Type	Full Name
1	SCN	3	Ligand/Ion	THIOCYANATE ION

Biological Unit 2 (1, 4)

No.	Name	Count	Type	Full Name
1	SCN	4	Ligand/Ion	THIOCYANATE ION

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	SCN	1	Ligand/Ion	THIOCYANATE ION

Biological Unit 4 (1, 1)

No.	Name	Count	Type	Full Name
1	SCN	1	Ligand/Ion	THIOCYANATE ION

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PHE A:36 , PHE A:128 , VAL A:129	BINDING SITE FOR RESIDUE SCN A 201
2	AC2	SOFTWARE	GLU A:24 , ARG A:58 , ALA A:151 , HOH A:321	BINDING SITE FOR RESIDUE SCN A 202
3	AC3	SOFTWARE	GLN A:136 , ALA A:140 , HOH A:367 , HOH A:379	BINDING SITE FOR RESIDUE SCN A 203
4	AC4	SOFTWARE	VAL B:16 , PRO B:20 , TYR B:59 , HOH B:515	BINDING SITE FOR RESIDUE SCN B 201
5	AC5	SOFTWARE	PHE B:36 , SER B:127 , PHE B:128 , VAL B:129	BINDING SITE FOR RESIDUE SCN B 202
6	AC6	SOFTWARE	GLU B:24 , PHE B:26 , ASN B:43 , ARG B:58 , ALA B:151 , MET B:152 , HOH B:345	BINDING SITE FOR RESIDUE SCN B 203
7	AC7	SOFTWARE	PHE B:128 , ASN B:131 , SER B:132 , ASP B:163	BINDING SITE FOR RESIDUE SCN B 204
8	AC8	SOFTWARE	PHE C:36 , SER C:127 , PHE C:128 , VAL C:129	BINDING SITE FOR RESIDUE SCN C 201
9	AC9	SOFTWARE	ALA D:19 , TYR D:59 , GLN D:136 , PHE D:144	BINDING SITE FOR RESIDUE SCN D 201

(no "SS Bond" information available for 4OCF)

Asymmetric Unit

No.	Residues
1	Val A:149	-	Pro A:150
2	Val B:149	-	Pro B:150
3	Val C:149	-	Pro C:150
4	Val D:149	-	Pro D:150

(no "SAP(SNP)/Variant" information available for 4OCF)

(no "PROSITE Motif" information available for 4OCF)

(no "Exon" information available for 4OCF)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:187
                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eee..........eeeee...hhhhhhhhhh.hhhhhhhhhh.....eeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh..hhhhhhhhh.hhhhhhhhhhhhhhhhhh......eeee...eee........hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ocf A   1 ADISEGKQYTNLSKPVAGAPQVVEFFSFYSPHCYQFSEVYKVNSTVEKNVPENTKMARYHVDFLGPLGKEMTRAWAVAIALGVEDQVSPALFKGIQETQSIRSVDDIRTTFINAGVKAEDYDAAINSFVVNSLVSQQQNAVTDFQINGVPAMVIDGKYKMKNDGISAKSPEEYAKAYSDVVNQLLMK 187
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180

Chain B from PDB  Type:PROTEIN  Length:188
                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eee..........eeeee...hhhhhhhhhh.hhhhhhhhhh.....eeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhh..hhhhhhhhh.hhhhhhhhhhhhhhhhhh......eeee...eee.hhhh...hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ocf B   1 ADISEGKQYTNLSKPVAGAPQVVEFFSFYSPHCYQFSEVYKVNSTVEKNVPENTKMARYHVDFLGPLGKEMTRAWAVAIALGVEDQVSPALFKGIQETQSIRSVDDIRTTFINAGVKAEDYDAAINSFVVNSLVSQQQNAVTDFQINGVPAMVIDGKYKMKNDGISAKSPEEYAKAYSDVVNQLLMKK 188
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180

Chain C from PDB  Type:PROTEIN  Length:187
                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee..........eeeee...hhhhhhhhhh.hhhhhhhhhh.....eeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh..hhhhhhhhh.hhhhhhhhhhhhhhhhhh......eeee...eee........hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ocf C   2 DISEGKQYTNLSKPVAGAPQVVEFFSFYSPHCYQFSEVYKVNSTVEKNVPENTKMARYHVDFLGPLGKEMTRAWAVAIALGVEDQVSPALFKGIQETQSIRSVDDIRTTFINAGVKAEDYDAAINSFVVNSLVSQQQNAVTDFQINGVPAMVIDGKYKMKNDGISAKSPEEYAKAYSDVVNQLLMKK 188
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181

Chain D from PDB  Type:PROTEIN  Length:187
                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee..........eeeee...hhhhhhhhh..hhhhhhhhhh.....eeeee......hhhhhhhhhhhhhhh.hhhhhhhhhhhhhh......hhhhhhhhhhhh..hhhhhhhhh.hhhhhhhhhhhhhhhhhh......eeee...eee.hhhh...hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ocf D   2 DISEGKQYTNLSKPVAGAPQVVEFFSFYSPHCYQFSEVYKVNSTVEKNVPENTKMARYHVDFLGPLGKEMTRAWAVAIALGVEDQVSPALFKGIQETQSIRSVDDIRTTFINAGVKAEDYDAAINSFVVNSLVSQQQNAVTDFQINGVPAMVIDGKYKMKNDGISAKSPEEYAKAYSDVVNQLLMKK 188
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4OCF)

(no "CATH Domain" information available for 4OCF)

(no "Pfam Domain" information available for 4OCF)

Asymmetric Unit(hide GO term definitions)

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	Cis Peptide Bonds
		Val A:149 - Pro A:150	[ RasMol ]
		Val B:149 - Pro B:150	[ RasMol ]
		Val C:149 - Pro C:150	[ RasMol ]
		Val D:149 - Pro D:150	[ RasMol ]

Biological Units
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	B4EZ68_PROMH \| B4EZ68	:	4oce 4od7

4oce	WILD TYPE PROTEUS MIRABLIS DSBA
4od7	COMPLEX STRUCTURE OF PROTEUS MIRABLIS DSBA (C30S) WITH A NON-COVALENTLY BOUND PEPTIDE PWATCDS

Description

Compounds

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Chains, Units

Ligands, Modified Residues, Ions (1, 9)

Sites (9, 9)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

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