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(-) Description

Title :  CRYSTAL STRUCTURE OF STK25-MO25 COMPLEX
 
Authors :  M. Feng, Q. Hao, Z. C. Zhou
Date :  13 Dec 13  (Deposition) - 03 Dec 14  (Release) - 03 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.58
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Scafolding Protein, Ser/Thr Protein Kinase, Transferase Activator- Transferase Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Q. Hao, M. Feng, Z. Shi, C. Li, M. Chen, W. Wang, M. Zhang, S. Jiao, Z. Zhou
Structural Insights Into Regulatory Mechanisms Of Mo25-Mediated Kinase Activation.
J. Struct. Biol. V. 186 224 2014
PubMed-ID: 24746913  |  Reference-DOI: 10.1016/J.JSB.2014.04.005

(-) Compounds

Molecule 1 - CALCIUM-BINDING PROTEIN 39
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A-HISTEV
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 8-334
    Gene: CAB39, CGI-66, MO25
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MO25ALPHA, PROTEIN MO25
 
Molecule 2 - SERINE/THREONINE-PROTEIN KINASE 25
    Chains: B
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A-HISTEV
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: KINASE DOMAIN, UNP RESIDUES 1-293
    Gene: SOK1, STK25, YSK1
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: STE20-LIKE KINASE, STERILE 20/OXIDANT STRESS-RESPONSE KINASE 1, SOK-1, STE20/OXIDANT STRESS RESPONSE KINASE 1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1J601Ligand/Ion5-[(E)-(5-CHLORO-2-OXO-1,2-DIHYDRO-3H-INDOL-3-YLIDENE)METHYL]-N-[2-(DIETHYLAMINO)ETHYL]-2,4-DIMETHYL-1H-PYRROLE-3-CARBOXAMIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE B:26 , GLY B:27 , ALA B:47 , GLU B:96 , TYR B:97 , LEU B:98 , GLY B:101 , ASP B:105 , LEU B:147 , ALA B:157 , ALA B:158 , PHE B:159 , TYR B:287BINDING SITE FOR RESIDUE J60 B 1000

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NZW)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gln A:310 -Asn A:311
2Ala B:56 -Glu B:57

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NZW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NZW)

(-) Exons   (0, 0)

(no "Exon" information available for 4NZW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:309
                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhhhhh.hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nzw A  11 SPADIVKNLKESMAVLEKKAEKATEEVSKNLVAMKEILYGKEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDRTFNDEKTYLVKQIRD 332
                                    20      ||36        46        56|       69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309    || 323         
                                           27|                    56|                                                                                                                                                                                                                                                           314|             
                                            34                     60                                                                                                                                                                                                                                                            319             


Chain B from PDB  Type:PROTEIN  Length:266
                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhh.eee...........eeeeee.....eeeeeee........hhhhhhhhhhhh.........eeeeee....eeeee.................hhhhhhhhhhhhhhhhhhhhhh............ee.....ee........hhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.......hhhhhhhhh............hhhhhhhhhhhh..hhhhh....hhhhhhhhhhh..hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nzw B  11 HSRVDPEELFTKLDRIGKGSFGEVYKGIDNHTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYFGSYLKSTKLWIIMEYLGGGSALDLLKPGPLEETYIATILREILKGLDYLHSERKIHRDIKAANVLLSEQGDVKLAAFGVAGTPFWMAPEVIKQYDFKADIWSLGITAIELAKGEPPNSDLHPMRVLFLIPKNSPPTLEGQHSKPFKEFVEACLNKDPRFRPTAKELLKHKFITRYTKKTSFLTELIDRYKRWKS 292
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160 ||    184    || 196       206       216       226       236       246       256       266       276       286      
                                                                                                                                                                                 162|         189|                                                                                                    
                                                                                                                                                                                  177          192
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NZW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NZW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NZW)

(-) Gene Ontology  (46, 52)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala B:56 - Glu B:57   [ RasMol ]  
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  4nzw
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  STK25_HUMAN | O00506
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  2.7.11.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CAB39_HUMAN | Q9Y376: 1upk 1upl 2wtk 3gni 4fza 4fzd 4fzf 4o27
        STK25_HUMAN | O00506: 2xik 3w8h

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4NZW)