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(-) Description

Title :  CRYSTAL STRUCTURE OF MST3-MO25 COMPLEX WITH WIF MOTIF
 
Authors :  Q. Hao, M. Feng, Z. C. Zhou
Date :  16 Dec 13  (Deposition) - 03 Dec 14  (Release) - 03 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.19
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Scaffold Protein, Protein Ser/Thr Kinase, Transferase Activator- Transferase Complex, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Q. Hao, M. Feng, Z. Shi, C. Li, M. Chen, W. Wang, M. Zhang, S. Jiao, Z. Zhou
Structural Insights Into Regulatory Mechanisms Of Mo25-Mediated Kinase Activation.
J. Struct. Biol. V. 186 224 2014
PubMed-ID: 24746913  |  Reference-DOI: 10.1016/J.JSB.2014.04.005

(-) Compounds

Molecule 1 - CALCIUM-BINDING PROTEIN 39
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: HT-PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: MO25-LIKE, UNP RESIDUES 11-333
    Gene: CAB39, CGI-66, MO25
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MO25ALPHA, PROTEIN MO25
 
Molecule 2 - SERINE/THREONINE-PROTEIN KINASE 24
    Chains: B
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: HT-PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: KINASE DOMAIN, UNP RESIDUES 30-309
    Gene: MST3, STK24, STK3
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MAMMALIAN STE20-LIKE PROTEIN KINASE 3, MST-3, STE20-LIKE KINASE MST3, SERINE/THREONINE-PROTEIN KINASE 24 36 KDA SUBUNIT, MAMMALIAN STE20-LIKE PROTEIN KINASE 3 N-TERMINAL, MST3/N, SERINE/THREONINE-PROTEIN KINASE 24 12 KDA SUBUNIT, MAMMALIAN STE20- LIKE PROTEIN KINASE 3 C-TERMINAL, MST3/C
 
Molecule 3 - 5-MER PEPTIDE FROM SERINE/THREONINE-PROTEIN KINASE 24
    Chains: C
    EC Number: 2.7.11.1
    Engineered: YES
    Fragment: WIF MOTIF, UNP RESIDUES 336-340
    Mutation: YES
    Other Details: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED.
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MN1Ligand/IonMANGANESE (II) ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY B:33 , SER B:34 , PHE B:35 , VAL B:38 , ALA B:51 , LYS B:53 , GLU B:100 , LEU B:102 , SER B:106 , ASN B:149 , LEU B:151 , ASP B:162 , MN B:501BINDING SITE FOR RESIDUE ADP B 500
2AC2SOFTWAREASN B:149 , ASP B:162 , ADP B:500BINDING SITE FOR RESIDUE MN B 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4O27)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Phe B:163 -Gly B:164
2Arg B:276 -Asn B:277
3Phe C:4 -Glu C:5

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4O27)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4O27)

(-) Exons   (0, 0)

(no "Exon" information available for 4O27)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:325
                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhhhhh.hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh...hhhhhhhhhhh.hhhhhhhhh.......hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o27 A   9 MASPADIVKNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDL 333
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328     


Chain B from PDB  Type:PROTEIN  Length:281
                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhheeeeeeeee....eeeeeee.....eeeeeeeehhhhh..hhhhhhhhhhhhhh.......eeeeeee..eeeeeee....eehhhhh.....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee.............hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh.........hhhhhhhhhhhh..hhhhh.hhhhhh..............hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o27 B  17 MADPEELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNEFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHKFILRNAKKTSYLTELIDRYKRWKAE 297
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296 


Chain C from PDB  Type:PROTEIN  Length:5
                                     
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..... Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 4o27 C   1 DWIFE   5
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4O27)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4O27)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4O27)

(-) Gene Ontology  (46, 53)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Arg B:276 - Asn B:277   [ RasMol ]  
    Phe B:163 - Gly B:164   [ RasMol ]  
    Phe C:4 - Glu C:5   [ RasMol ]  
 

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  4o27
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  CAB39_HUMAN | Q9Y376
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  STK24_HUMAN | Q9Y6E0
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  2.7.11.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CAB39_HUMAN | Q9Y376: 1upk 1upl 2wtk 3gni 4fza 4fzd 4fzf 4nzw
        STK24_HUMAN | Q9Y6E0: 3a7f 3a7g 3a7h 3a7i 3a7j 3ckw 3ckx 3zhp 4qml 4qmm 4qmn 4qmo 4qmp 4qmq 4qms 4qmt 4qmu 4qmv 4qmw 4qmx 4qmy 4qmz 4qna 4qo9 4u8z 4w8d 4w8e

(-) Related Entries Specified in the PDB File

4nzw