4NYC - JenaLib

Title :   CRYSTAL STRUCTURE OF THE E. COLI THIM RIBOSWITCH IN COMPLEX WITH THIENO[2,3-B]PYRAZIN-7-AMINE

Authors :   K. D. Warner, P. Homan, K. M. Weeks, A. G. Smith, C. Abell, A. R. Ferre-D'A

Date :   10 Dec 13 (Deposition) - 04 Jun 14 (Release) - 04 Jun 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.15

Chains :   Asym./Biol. Unit : A

Keywords :   Fragment-Based Drug Discovery, Riboswitch, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. D. Warner, P. Homan, K. M. Weeks, A. G. Smith, C. Abell, A. R. Ferre-D'Amare
Validating Fragment-Based Drug Discovery For Biological Rnas: Lead Fragments Bind And Remodel The Tpp Riboswitch Specifically.
Chem. Biol. V. 21 591 2014
PubMed-ID: 24768306 | Reference-DOI: 10.1016/J.CHEMBIOL.2014.03.007

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 18)

Sites (15, 15)

Asymmetric Unit (15, 15)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	G A:19 , U A:20 , G A:40 , G A:42 , A A:43	BINDING SITE FOR RESIDUE SVN A 101
02	AC2	SOFTWARE	G A:18 , C A:57	BINDING SITE FOR RESIDUE MG A 102
03	AC3	SOFTWARE	C A:63 , U A:64	BINDING SITE FOR RESIDUE MN A 103
04	AC4	SOFTWARE	A A:41	BINDING SITE FOR RESIDUE MN A 104
05	AC5	SOFTWARE	A A:35 , G A:36	BINDING SITE FOR RESIDUE MG A 105
06	AC6	SOFTWARE	A A:69 , A23 A:91	BINDING SITE FOR RESIDUE MG A 106
07	AC7	SOFTWARE	G A:40 , HOH A:202 , HOH A:205	BINDING SITE FOR RESIDUE MN A 107
08	AC8	SOFTWARE	A A:69 , A23 A:91	BINDING SITE FOR RESIDUE MN A 109
09	AC9	SOFTWARE	U A:59 , G A:60 , G A:72 , G A:78	BINDING SITE FOR RESIDUE MN A 110
10	BC1	SOFTWARE	G A:89	BINDING SITE FOR RESIDUE MG A 111
11	BC2	SOFTWARE	U A:59 , G A:60 , A A:61 , G A:72	BINDING SITE FOR RESIDUE MG A 112
12	BC3	SOFTWARE	G A:17	BINDING SITE FOR RESIDUE MG A 113
13	BC4	SOFTWARE	U A:64	BINDING SITE FOR RESIDUE MG A 114
14	BC5	SOFTWARE	A A:41	BINDING SITE FOR RESIDUE MG A 115
15	BC6	SOFTWARE	A A:61	BINDING SITE FOR RESIDUE MG A 116

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

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Chain A from PDB  Type:DNA/RNA  Length:80
                                                                                                               
                  4nyc A  9 GCGACUCGGGGUGCCCUUCGUGAAGGCUGAGAAAUACCCGUAUCACCUGAUCUGGAUAAUGCCAGCGUAGGGAAGUCGCa 91
                                    18       |31        41        51        61        71        81        91
                                            26|                                                           91-A23
                                             30

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

4nya	CRYSTAL STRUCTURE OF THE E. COLI THIM RIBOSWITCH IN COMPLEX WITH 5-(AZIDOMETHYL)-2-METHYLPYRIMIDIN-4-AMINE
4nyb	CRYSTAL STRUCTURE OF THE E. COLI THIM RIBOSWITCH IN COMPLEX WITH (4-(1,2,3-THIADIAZOL-4-YL)PHENYL)METHANAMINE
4nyd	CRYSTAL STRUCTURE OF THE E. COLI THIM RIBOSWITCH IN COMPLEX WITH HYPOXANTHINE
4nyg	CRYSTAL STRUCTURE OF THE E. COLI THIM RIBOSWITCH IN COMPLEX WITH THIAMINE

Description