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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE E. COLI THIM RIBOSWITCH IN COMPLEX THIENO[2,3-B]PYRAZIN-7-AMINE
Keywords FRAGMENT-BASED DRUG DISCOVERY, RIBOSWITCH, RNA
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

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Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  DNA/RNA    A 80 1622 25
2  Ligand   THIM TPP RIBOSWITCH  A 17 0 26
3 Water     5 0 5
total       102 1622 56

Nucleic acids
Unit 1 G9 C10 G11 A12 C13 U14 C15 G16 G17 G18 G19 U20 G21 C22 C23 C24 U25 U26 C30 G31 U32 G33 A34 A35 G36 G37 C38 U39 G40 A41 G42 A43 A44 A45 U46 A47 C48 C49 C50 G51 U52 A53 U54 C55 A56 C57 C58 U59 G60 A61 U62 C63 U64 G65 G66 A67 U68 A69 A70 U71 G72 C73 C74 A75 G76 C77 G78 U79 A80 G81 G82 G83 A84 A85 G86 U87 C88 G89 C90 A2391

Ligands
Unit 2 SVN101 MG102 MN103 MN104 MG105 MG106 MN107 MG108 MN109 MN110 MG111 MG112 MG113 MG114 MG115 MG116 MG117

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany