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(-) Description

Title :  TANDEM CHROMODOMAINS OF HUMAN CHD1 IN COMPLEX WITH INFLUENZA VIRUS NS1 C-TERMINAL TAIL TRIMETHYLATED AT K229
 
Authors :  S. Qin, W. Tempel, C. Xu, M. El Bakkouri, C. Bountra, C. H. Arrowsmith, A. M. Edwards, J. Min, Structural Genomics Consortium (Sgc)
Date :  05 Dec 13  (Deposition) - 29 Jan 14  (Release) - 04 Jun 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Structural Genomics Consortium, Sgc, Peptide Binding Protein-Viral Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Qin, Y. Liu, W. Tempel, M. S. Eram, C. Bian, K. Liu, G. Senisterra, L. Crombet, M. Vedadi, J. Min
Structural Basis For Histone Mimicry And Hijacking Of Host Proteins By Influenza Virus Protein Ns1.
Nat Commun V. 5 3952 2014
PubMed-ID: 24853335  |  Reference-DOI: 10.1038/NCOMMS4952

(-) Compounds

Molecule 1 - CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1
    Chains: A, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28-MHL
    Expression System Strain: BL21(DE3)-V2R-PRARE2
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 268-443
    Gene: CHD1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CHD-1, ATP-DEPENDENT HELICASE CHD1
 
Molecule 2 - NONSTRUCTURAL PROTEIN 1
    Chains: B, D
    Engineered: YES
    Fragment: UNP RESIDUES 216-230
    Organism Scientific: INFLUENZA A VIRUS
    Organism Taxid: 1348507
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 35)

Asymmetric Unit (3, 35)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2M3L2Mod. Amino AcidN-TRIMETHYLLYSINE
3UNX31Ligand/IonUNKNOWN ATOM OR ION
Biological Unit 1 (3, 20)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2M3L1Mod. Amino AcidN-TRIMETHYLLYSINE
3UNX18Ligand/IonUNKNOWN ATOM OR ION
Biological Unit 2 (3, 15)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2M3L1Mod. Amino AcidN-TRIMETHYLLYSINE
3UNX13Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:324 , SER A:326 , HIS A:329 , SER A:422 , TRP A:423 , GLU A:424 , THR B:225 , ALA B:226 , ARG B:227BINDING SITE FOR RESIDUE GOL B 301
2AC2SOFTWAREGLY C:324 , SER C:326 , HIS C:329 , SER C:422 , TRP C:423 , GLU C:424 , THR D:225 , ALA D:226 , ARG D:227BINDING SITE FOR RESIDUE GOL C 513

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NW2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4NW2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NW2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NW2)

(-) Exons   (0, 0)

(no "Exon" information available for 4NW2)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:173
                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeee....hhhhhhhhhhhhh............eeeeeeeee...hhhhheeehhhhhhhh....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeee.....eeeeeee...hhhhheeehhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nw2 A 270 EFETIERFMDCRIGRKGATGATTTIYAVEADGDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQETKRWLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFS 442
                                   279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439   


Chain B from PDB  Type:PROTEIN  Length:12
                                            
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author ............ Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                 4nw2 B 216 PKQKRRTARSkV 230
                                || 228| 
                              220|    | 
                               224    | 
                                    229-M3L


Chain C from PDB  Type:PROTEIN  Length:173
                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeee...hhhhhhhhhhhhhh............eeeeeeeee...hhhhheeehhhhhhhh....hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh..eeeeeee...........eeeee...hhhhheeehhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nw2 C 270 EFETIERFMDCRIGRKGATGATTTIYAVEADGDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQETKRWLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFS 442
                                   279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439   


Chain D from PDB  Type:PROTEIN  Length:13
                                             
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author ............. Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                 4nw2 D 216 PKQKRKRTARSkV 230
                                 ||227 | 
                               221|    | 
                                224    | 
                                     229-M3L
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NW2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NW2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NW2)

(-) Gene Ontology  (32, 44)

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  4nw2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CHD1_HUMAN | O14646: 2b2t 2b2u 2b2v 2b2w 2b2y 2n39 4b4c 4o42 5afw
        NS1_I72A2 | P03495: 1ail 1ns1 2kkz 2rhk 3ee8 3ee9 3kwg 3kwi 4o45

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4NW2)