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(-) Description

Title :  CRYSTAL STRUCTURE OF HLMI
 
Authors :  D. H. Scharf, M. Groll, A. Habel, T. Heinekamp, C. Hertweck, A. A. Brakha E. M. Huber
Date :  02 Dec 13  (Deposition) - 05 Mar 14  (Release) - 05 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Disulfide Bond, Natural Sulfur Products, Holomycin, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. H. Scharf, M. Groll, A. Habel, T. Heinekamp, C. Hertweck, A. A. Brakhage, E. M. Huber
Flavoenzyme-Catalyzed Formation Of Disulfide Bonds In Natural Products
Angew. Chem. Int. Ed. Engl. V. 53 2221 2014
PubMed-ID: 24446392  |  Reference-DOI: 10.1002/ANIE.201309302

(-) Compounds

Molecule 1 - THIOREDOXIN REDUCTASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET43.1
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 29-354
    Gene: SCLAV_5275
    Organism Scientific: STREPTOMYCES CLAVULIGERUS
    Organism Taxid: 443255
    Strain: ATCC 27064

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 5)

Asymmetric Unit (5, 5)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3GOL1Ligand/IonGLYCEROL
4GSH1Ligand/IonGLUTATHIONE
5PO41Ligand/IonPHOSPHATE ION
Biological Unit 1 (4, 8)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3GOL2Ligand/IonGLYCEROL
4GSH2Ligand/IonGLUTATHIONE
5PO42Ligand/IonPHOSPHATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:43 , HIS A:139 , CYS A:140 , PRO A:141 , TYR A:142 , HIS A:165 , ASN A:275 , PRO A:279 , ARG A:280 , ALA A:281 , PHE A:295 , HIS A:299 , FAD A:402 , CL A:404 , HOH A:821 , HOH A:854 , HOH A:938 , HOH A:939BINDING SITE FOR RESIDUE GSH A 401
2AC2SOFTWAREGLY A:15 , GLY A:17 , ALA A:18 , GLY A:19 , VAL A:37 , ASP A:38 , SER A:39 , GLY A:40 , ALA A:41 , PRO A:42 , ARG A:43 , ASN A:44 , SER A:47 , MET A:50 , GLN A:51 , GLY A:82 , GLU A:83 , VAL A:84 , ALA A:116 , THR A:117 , ASP A:121 , TRP A:133 , CYS A:143 , HIS A:144 , GLY A:274 , ASN A:275 , ALA A:281 , LEU A:282 , VAL A:283 , SER A:286 , GSH A:401 , HOH A:501 , HOH A:502 , HOH A:503 , HOH A:505 , HOH A:519 , HOH A:522 , HOH A:528 , HOH A:536 , HOH A:548 , HOH A:590BINDING SITE FOR RESIDUE FAD A 402
3AC3SOFTWARESER A:47 , GLY A:134 , LYS A:135 , HIS A:144 , HOH A:562 , HOH A:683 , HOH A:785 , HOH A:861BINDING SITE FOR RESIDUE GOL A 403
4AC4SOFTWAREHIS A:165 , GSH A:401 , HOH A:574BINDING SITE FOR RESIDUE CL A 404
5AC5SOFTWAREARG A:261 , HOH A:817 , HOH A:923BINDING SITE FOR RESIDUE PO4 A 405

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:140 -A:143

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4NTD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NTD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NTD)

(-) Exons   (0, 0)

(no "Exon" information available for 4NTD)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:318
                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........eeeeee..hhhhhhhhhhhhhh...eeeee.....................hhhhhhhhhhhhhhhh..eeee..eeeeeee......eeeeee....eeeeeeeee...eeee.....hhhhhh...ee.hhhhhhhhhh...eeee....hhhhhhhhhh.....eeee......hhhhhhhhhhh...ee...eeeeeee..eeeeeee....eee..eee...eeee.hhhhhhhh.....................eee.hhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ntd A   1 NGFTHEGGIDVVVIGAGAGGLNAALVLARARRRVVLVDSGAPRNAPSAHMQGFLSRDGMAPSALLETGRAEVSGYGAEFIRGEVDDVEREGEDDAPRFTVRLVGGVALSTRRVVVATGLRDELPDIPGVRERWGKDLLHCPYCHGYEVSDQPLGVLGTSPGAVRHALLLRQWSDDVVLFRHGLELTDDDRRALSARQVPVIEGTVKRLVVEDDRLRGVELAEDSGVARSTVFVVPRMVPRDGLLTALGCERGADGWIATDRSGLTSVPGVWAVGNVVDPRALVVSSAGMGSAAAFALNHQLVDEDVASAVRAAARTVA 318
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NTD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NTD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NTD)

(-) Gene Ontology  (3, 3)

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(-) Related Entries Specified in the PDB File

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