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(-) Description

Title :  STRUCTURE OF HUMAN MTH1 IN COMPLEX WITH TH287
 
Authors :  R. P-A. Berntsson, A. Jemth, R. Gustafsson, L. M. Svensson, T. Helleday P. Stenmark
Date :  04 Oct 13  (Deposition) - 16 Apr 14  (Release) - 05 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Oxidised Nucleotide Degradation, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  H. Gad, T. Koolmeister, A. S. Jemth, S. Eshtad, S. A. Jacques, C. E. Strom, L. M. Svensson, N. Schultz, T. Lundback, B. O. Einarsdottir, A. Saleh, C. Gokturk, P. Baranczewski, R. Svensson, R. P. Berntsson, R. Gustafsson, K. Stromberg, K. Sanjiv, M. C. Jacques-Cordonnier, M. Desroses, A. L. Gustavsson, R. Olofsson F. Johansson, E. J. Homan, O. Loseva, L. Brautigam, L. Johansson, A. Hoglund, A. Hagenkort, T. Pham, M. Altun, F. Z. Gaugaz, S. Vikingsson, B. Evers, M. Henriksson, K. S. Vallin, O. A. Wallner, L. G. Hammarstrom, E. Wiita, I. Almlof, C. Kalderen, H. Axelsson, T. Djureinovic, J. C. Puigvert, M. Haggblad, F. Jeppsson, U. Martens, C. Lundin, B. Lundgren, I. Granelli, A. J. Jensen, P. Artursson, J. A. Nilsson, P. Stenmark, M. Scobie, U. W. Berglund, T. Helleday
Mth1 Inhibition Eradicates Cancer By Preventing Sanitation Of The Dntp Pool.
Nature V. 508 215 2014
PubMed-ID: 24695224  |  Reference-DOI: 10.1038/NATURE13181

(-) Compounds

Molecule 1 - 7,8-DIHYDRO-8-OXOGUANINE TRIPHOSPHATASE
    ChainsA
    EC Number3.6.1.55, 3.6.1.56
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneNUDT1, MTH1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Synonym2-HYDROXY-DATP DIPHOSPHATASE, 8-OXO-DGTPASE, NUCLEOSIDE DIPHOSPHATE-LINKED MOIETY X MOTIF 1, NUDIX MOTIF 1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
12GD1Ligand/Ion6-(2,3-DICHLOROPHENYL)-N~4~-METHYLPYRIMIDINE-2,4-DIAMINE
2SO44Ligand/IonSULFATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:8 , ASN A:33 , GLY A:36 , GLY A:37 , PHE A:72 , PHE A:74 , VAL A:83 , TRP A:117 , ASP A:119 , ASP A:120BINDING SITE FOR RESIDUE 2GD A 201
2AC2SOFTWAREHIS A:65 , LYS A:66 , HOH A:423 , HOH A:428BINDING SITE FOR RESIDUE SO4 A 202
3AC3SOFTWARELYS A:138 , LEU A:146 , ASP A:147 , HOH A:346BINDING SITE FOR RESIDUE SO4 A 203
4AC4SOFTWAREALA A:63 , HIS A:65 , THR A:88 , ASP A:89 , SER A:90 , HOH A:425BINDING SITE FOR RESIDUE SO4 A 204
5AC5SOFTWAREARG A:17 , THR A:94 , PRO A:95 , TRP A:105 , ARG A:151 , HOH A:333 , HOH A:337BINDING SITE FOR RESIDUE SO4 A 205

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4N1T)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4N1T)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4N1T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4N1T)

(-) Exons   (0, 0)

(no "Exon" information available for 4N1T)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:154
                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee...eeeeeee........ee.eeee.....hhhhhhhhhhhhhhh.ee...eeeeeeeeee.....eeeeeeeee..ee........eeeeeee.hhhhhhhhhhhhhhhhhhhhh..eeeeeeeee...eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4n1t A   3 ASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFCTDSIQGTPVESDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVDTV 156
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152    

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4N1T)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4N1T)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4N1T)

(-) Gene Ontology  (26, 26)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        8ODP_HUMAN | P366391iry 3q93 3whw 3zr0 3zr1 4c9w 4c9x 4n1u 5ans 5ant 5anu 5anv 5anw 5fsi 5fsk 5fsl 5fsm 5fsn 5fso 5ghi 5ghj 5ghm 5ghn 5gho 5ghp 5ghq 5ws7

(-) Related Entries Specified in the PDB File

3zr0 APO MTH1
3zr1 MTH1 IN COMPLEX WITH 8-OXO-DGMP
4n1u MTH1 IN COMPLEX WITH TH588