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(-) Description

Title :  Q8A HFQ FROM PSEUDOMONAS AERUGINOSA
 
Authors :  V. N. Murina, V. V. Filimonov, B. S. Melnik, M. Uhlein, U. Mueller, M. Wei A. D. Nikulin
Date :  09 Sep 13  (Deposition) - 09 Jul 14  (Release) - 09 Jul 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.16
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,C,D,E,F  (1x)
Biol. Unit 2:  G,H,I,J,K,L  (1x)
Keywords :  Lsm Fold, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. N. Murina, B. S. Melnik, V. V. Filimonov, M. Uhlein, M. S. Weiss, U. Muller, A. D. Nikulin
Effect Of Conserved Intersubunit Amino Acid Substitutions O Hfq Protein Structure And Stability.
Biochemistry Mosc. V. 79 469 2014
PubMed-ID: 24954598  |  Reference-DOI: 10.1134/S0006297914050113

(-) Compounds

Molecule 1 - PROTEIN HFQ
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: HFQ, PA4944
    Mutation: YES
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 208964
    Strain: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228
    Synonym: BACTERIAL TRANSLATIONAL REGULATOR HFQ

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): ABCDEF      
Biological Unit 2 (1x):       GHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 35)

Asymmetric Unit (4, 35)
No.NameCountTypeFull Name
1K8Ligand/IonPOTASSIUM ION
2NA3Ligand/IonSODIUM ION
3SO41Ligand/IonSULFATE ION
4ZN23Ligand/IonZINC ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1K-1Ligand/IonPOTASSIUM ION
2NA-1Ligand/IonSODIUM ION
3SO4-1Ligand/IonSULFATE ION
4ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1K-1Ligand/IonPOTASSIUM ION
2NA-1Ligand/IonSODIUM ION
3SO41Ligand/IonSULFATE ION
4ZN-1Ligand/IonZINC ION

(-) Sites  (34, 34)

Asymmetric Unit (34, 34)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:57 , HOH A:212 , HOH B:206BINDING SITE FOR RESIDUE ZN A 101
02AC2SOFTWAREHIS A:5 , ASP A:9BINDING SITE FOR RESIDUE ZN A 102
03AC3SOFTWAREGLU A:18 , ARG A:66 , VAL A:68 , HOH A:224 , GLU D:18BINDING SITE FOR RESIDUE K A 103
04AC4SOFTWAREHIS B:57 , HOH B:204 , HOH B:219BINDING SITE FOR RESIDUE ZN B 101
05AC5SOFTWAREHIS B:5 , PHE B:39 , LYS B:56 , HOH B:218 , HOH B:228 , SER C:2BINDING SITE FOR RESIDUE ZN B 102
06AC6SOFTWAREGLU B:18 , HOH B:212 , GLU E:18BINDING SITE FOR RESIDUE K B 103
07AC7SOFTWAREHIS C:57 , HOH C:228 , HOH C:229 , HOH C:230BINDING SITE FOR RESIDUE ZN C 101
08AC8SOFTWAREHIS C:5 , HOH C:216 , HOH C:227BINDING SITE FOR RESIDUE ZN C 102
09AC9SOFTWAREASP C:9 , HOH C:223BINDING SITE FOR RESIDUE K C 103
10BC1SOFTWAREGLU C:18 , ARG C:69 , HOH C:218 , GLU F:18BINDING SITE FOR RESIDUE K C 104
11BC2SOFTWAREHIS D:57 , HOH D:203 , HOH D:209 , HOH D:225BINDING SITE FOR RESIDUE ZN D 101
12BC3SOFTWAREHIS D:5 , HOH D:217 , HOH D:221 , HOH E:209BINDING SITE FOR RESIDUE ZN D 102
13BC4SOFTWAREGLU A:18 , THR D:14 , GLU D:18 , HOH D:208 , HOH D:216BINDING SITE FOR RESIDUE K D 103
14BC5SOFTWAREHIS E:57 , HOH E:231 , HOH E:232 , HOH E:233BINDING SITE FOR RESIDUE ZN E 101
15BC6SOFTWAREHIS E:5 , ASP E:9 , HOH E:212 , HOH E:230 , HOH F:213BINDING SITE FOR RESIDUE ZN E 102
16BC7SOFTWAREHIS F:57 , HOH F:204 , HOH F:217BINDING SITE FOR RESIDUE ZN F 101
17BC8SOFTWAREHIS F:5 , HOH F:212 , HOH F:230 , HOH F:232BINDING SITE FOR RESIDUE ZN F 102
18BC9SOFTWAREGLU C:18 , GLU F:18 , ARG F:66BINDING SITE FOR RESIDUE K F 103
19CC1SOFTWAREHIS G:57 , HOH G:209BINDING SITE FOR RESIDUE ZN G 101
20CC2SOFTWAREGLU G:18 , ARG G:69 , GLU J:18BINDING SITE FOR RESIDUE NA G 102
21CC3SOFTWAREHIS H:57 , HOH H:205 , HOH H:210 , HOH H:213BINDING SITE FOR RESIDUE ZN H 101
22CC4SOFTWAREHIS H:5 , HOH H:204 , HOH H:206 , HOH I:220BINDING SITE FOR RESIDUE ZN H 102
23CC5SOFTWARELYS H:47 , ASN H:48 , THR H:49BINDING SITE FOR RESIDUE SO4 H 103
24CC6SOFTWAREHIS I:57 , HOH I:205 , HOH I:212 , HOH I:221BINDING SITE FOR RESIDUE ZN I 101
25CC7SOFTWAREHIS I:5 , HOH I:203 , HOH I:204BINDING SITE FOR RESIDUE ZN I 102
26CC8SOFTWAREGLU I:18 , GLU L:18BINDING SITE FOR RESIDUE ZN I 103
27CC9SOFTWAREHIS J:57 , HOH J:202 , HOH J:210 , HOH J:212BINDING SITE FOR RESIDUE ZN J 101
28DC1SOFTWAREHIS J:5 , HOH K:209BINDING SITE FOR RESIDUE NA J 102
29DC2SOFTWAREHIS K:57 , HOH K:207 , HOH K:224 , HOH K:232BINDING SITE FOR RESIDUE ZN K 101
30DC3SOFTWAREHIS K:5 , ASP K:9 , HOH K:236 , HOH L:223BINDING SITE FOR RESIDUE ZN K 102
31DC4SOFTWAREGLU H:18 , GLU K:18 , HOH K:234BINDING SITE FOR RESIDUE NA K 103
32DC5SOFTWAREHIS L:57 , HOH L:206 , HOH L:224BINDING SITE FOR RESIDUE ZN L 101
33DC6SOFTWAREHIS L:5 , HOH L:211BINDING SITE FOR RESIDUE ZN L 102
34DC7SOFTWAREASP L:9 , HOH L:218BINDING SITE FOR RESIDUE K L 103

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MMK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4MMK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MMK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MMK)

(-) Exons   (0, 0)

(no "Exon" information available for 4MMK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:69
                                                                                                    
               SCOP domains --------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhh...eeeee....eeeeeeeee...eeeee....eeee...eeeeee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                  4mmk A  2 SKGHSLADPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVRL 70
                                    11        21        31        41        51        61         


Chain B from PDB  Type:PROTEIN  Length:69
                                                                                                    
               SCOP domains --------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhh..eeeee....eeeeeeeee...eeeee....eeee...eeeeee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                  4mmk B  2 SKGHSLADPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVRL 70
                                    11        21        31        41        51        61         


Chain C from PDB  Type:PROTEIN  Length:69
                                                                                                    
               SCOP domains --------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhh..eeeeee....eeeeee......eeeee....eeee...eeeeee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                  4mmk C  2 SKGHSLADPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVRL 70
                                    11        21        31        41        51        61         


Chain D from PDB  Type:PROTEIN  Length:68
                                                                                                   
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhh...eeeee....eeeeeeeee...eeeee....eeee...eeeeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  4mmk D  4 GHSLADPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVRLP 71
                                    13        23        33        43        53        63        


Chain E from PDB  Type:PROTEIN  Length:69
                                                                                                    
               SCOP domains --------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhh..eeeeee....eeeeee......eeeee.....eee...eeeee....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                  4mmk E  2 SKGHSLADPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVRL 70
                                    11        21        31        41        51        61         


Chain F from PDB  Type:PROTEIN  Length:68
                                                                                                   
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhh..eeeee....eeeeeeeee...eeeee....eeee...eeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  4mmk F  2 SKGHSLADPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVR 69
                                    11        21        31        41        51        61        


Chain G from PDB  Type:PROTEIN  Length:66
                                                                                                 
               SCOP domains ------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhh..eeeeee....eeeeeeeee...eeeee....eeee...eeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                  4mmk G  4 GHSLADPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVR 69
                                    13        23        33        43        53        63      


Chain H from PDB  Type:PROTEIN  Length:69
                                                                                                    
               SCOP domains --------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhh..eeeeee....eeeeeeeee...eeeee....eeee...eeeeee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                  4mmk H  2 SKGHSLADPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVRL 70
                                    11        21        31        41        51        61         


Chain I from PDB  Type:PROTEIN  Length:70
                                                                                                     
               SCOP domains ---------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhh...eeeee....eeeeeeeee...eeeee....eeee...eeeeee....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                  4mmk I  2 SKGHSLADPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVRLP 71
                                    11        21        31        41        51        61        71


Chain J from PDB  Type:PROTEIN  Length:69
                                                                                                    
               SCOP domains --------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh..eeeeee....eeeeeeeee...eeeee....eeee...eeeeee....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                  4mmk J  3 KGHSLADPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVRLP 71
                                    12        22        32        42        52        62         


Chain K from PDB  Type:PROTEIN  Length:70
                                                                                                     
               SCOP domains ---------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhh.eeeeee....eeeeeeeee...eeeee...eeeee...eeeeee....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                  4mmk K  2 SKGHSLADPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVRLP 71
                                    11        21        31        41        51        61        71


Chain L from PDB  Type:PROTEIN  Length:70
                                                                                                     
               SCOP domains ---------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhh...eeeee....eeeeeeeee...eeeee....eeee...eeeeee....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                  4mmk L  2 SKGHSLADPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVRLP 71
                                    11        21        31        41        51        61        71
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MMK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MMK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MMK)

(-) Gene Ontology  (2, 2)

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  4mmk
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  HFQ_PSEAE | Q9HUM0
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HFQ_PSEAE | Q9HUM0: 1u1s 1u1t 3inz 3m4g 3qui 4j5y 4j6w 4j6x 4j6y 4mml

(-) Related Entries Specified in the PDB File

1u1s WILD-TYPE PROTEIN HFQ
3inz H57T HFQ FROM PSEUDOMONAS AERUGINOSA
3m4g H57A HFQ FROM PSEUDOMONAS AERUGINOSA
4mml