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(-) Description

Title :  CRYSTAL STRUCTURE OF FAB H5M9 IN COMPLEX WITH INFLUENZA VIRUS HEMAGGLUTININ FROM A/VIET NAM/1203/2004 (H5N1)
 
Authors :  X. Zhu, I. A. Wilson
Date :  29 Aug 13  (Deposition) - 02 Oct 13  (Release) - 20 Nov 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.56
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,C,D,E,F,G,H,I,J,K,L  (1x)
Biol. Unit 2:  A,B,C,D,E,F  (1x)
Biol. Unit 3:  H,L  (1x)
Biol. Unit 4:  G,I  (1x)
Biol. Unit 5:  J,K  (1x)
Keywords :  H5N1 Influenza Virus, Broadly Neutralizing Murine Antibody, Escape Mutant, Passive Immunotherapy, Viral Protein-Immune System Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Zhu, Y. H. Guo, T. Jiang, Y. D. Wang, K. H. Chan, X. F. Li, W. Yu, R. Mcbride, J. C. Paulson, K. Y. Yuen, C. F. Qin, X. Y. Che, I. A. Wilson
A Unique And Conserved Neutralization Epitope In H5N1 Influenza Viruses Identified By An Antibody Against The A/Goose/Guangdong/1/96 Hemagglutinin.
J. Virol. V. 87 12619 2013
PubMed-ID: 24049169  |  Reference-DOI: 10.1128/JVI.01577-13

(-) Compounds

Molecule 1 - HEMAGGLUTININ HA1 CHAIN
    Chains: A, C, E
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Common: CABBAGE LOOPER
    Expression System Plasmid: PFASTBAC-HT
    Expression System Strain: HI5
    Expression System Taxid: 7111
    Expression System Vector Type: BACULOVIRUS
    Fragment: RECEPTOR BINDING DOMAIN (UNP RESIDUES 17-346)
    Gene: HA
    Organism Scientific: INFLUENZA A VIRUS
    Organism Taxid: 284218
    Strain: A/VIET NAM/1203/2004
 
Molecule 2 - H5M9 ANTIBODY, LIGHT CHAIN (KAPPA)
    Chains: L, I, K
    Engineered: YES
    Fragment: FAB
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
 
Molecule 3 - HEMAGGLUTININ HA2 CHAIN
    Chains: B, D, F
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Common: CABBAGE LOOPER
    Expression System Plasmid: PFASTBAC-HT
    Expression System Strain: HI5
    Expression System Taxid: 7111
    Expression System Vector Type: BACULOVIRUS
    Fragment: MEMBRANE FUSION DOMAIN (UNP RESIDUES 347-520)
    Gene: HA
    Organism Scientific: INFLUENZA A VIRUS
    Organism Taxid: 284218
    Strain: A/VIET NAM/1203/2004
 
Molecule 4 - H5M9 ANTIBODY, HEAVY CHAIN (IGG1)
    Chains: H, G, J
    Engineered: YES
    Fragment: FAB
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): ABCDEFGHIJKL
Biological Unit 2 (1x): ABCDEF      
Biological Unit 3 (1x):        H   L
Biological Unit 4 (1x):       G I   
Biological Unit 5 (1x):          JK 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 52)

Asymmetric Unit (2, 52)
No.NameCountTypeFull Name
1MAN14Ligand/IonALPHA-D-MANNOSE
2NAG38Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (2, 52)
No.NameCountTypeFull Name
1MAN14Ligand/IonALPHA-D-MANNOSE
2NAG38Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 2 (2, 49)
No.NameCountTypeFull Name
1MAN14Ligand/IonALPHA-D-MANNOSE
2NAG35Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1MAN-1Ligand/IonALPHA-D-MANNOSE
2NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1MAN-1Ligand/IonALPHA-D-MANNOSE
2NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 5 (1, 1)
No.NameCountTypeFull Name
1MAN-1Ligand/IonALPHA-D-MANNOSE
2NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (21, 21)

Asymmetric Unit (21, 21)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:21 , GLN B:15BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 21 RESIDUES 2010 TO 2011
02AC2SOFTWAREASN A:33BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 33 RESIDUES 2012 TO 2014
03AC3SOFTWAREASN A:158BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 158 RESIDUES 2008 TO 2009
04AC4SOFTWAREASN A:169 , ASN A:240BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 169 RESIDUES 2001 TO 2005
05AC5SOFTWAREASN A:289BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 289 RESIDUES 2006 TO 2007
06AC6SOFTWAREGLU B:147 , GLU B:150 , SER B:151 , ASN B:154 , THR B:156BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 154 RESIDUES 2001 TO 2003
07AC7SOFTWAREASN C:21BINDING SITE FOR CHAIN C OF SUGAR BOUND TO ASN C 21 RESIDUES 3012 TO 3013
08AC8SOFTWAREASN C:33BINDING SITE FOR CHAIN C OF SUGAR BOUND TO ASN C 33 RESIDUES 3001 TO 3002
09AC9SOFTWAREASN C:158BINDING SITE FOR CHAIN C OF SUGAR BOUND TO ASN C 158 RESIDUES 3010 TO 3011
10BC1SOFTWAREASN C:169 , ASN C:240BINDING SITE FOR CHAIN C OF SUGAR BOUND TO ASN C 169 RESIDUES 3003 TO 3007
11BC2SOFTWAREASN C:289BINDING SITE FOR CHAIN C OF SUGAR BOUND TO ASN C 289 RESIDUES 3008 TO 3009
12BC3SOFTWAREGLU D:147 , GLU D:150 , SER D:151 , ASN D:154BINDING SITE FOR CHAIN D OF SUGAR BOUND TO ASN D 154 RESIDUES 2001 TO 2004
13BC4SOFTWAREASN E:21 , GLN F:15BINDING SITE FOR CHAIN E OF SUGAR BOUND TO ASN E 21 RESIDUES 3013 TO 3014
14BC5SOFTWAREASN E:33BINDING SITE FOR CHAIN E OF SUGAR BOUND TO ASN E 33 RESIDUES 3001 TO 3002
15BC6SOFTWAREASN E:158BINDING SITE FOR CHAIN E OF SUGAR BOUND TO ASN E 158 RESIDUES 3010 TO 3012
16BC7SOFTWAREASN E:169 , ASN E:240BINDING SITE FOR CHAIN E OF SUGAR BOUND TO ASN E 169 RESIDUES 3003 TO 3007
17BC8SOFTWAREASN E:278 , ASN E:289BINDING SITE FOR CHAIN E OF SUGAR BOUND TO ASN E 289 RESIDUES 3008 TO 3009
18BC9SOFTWAREASN F:154 , THR F:156BINDING SITE FOR MONO-SACCHARIDE NAG F2001 BOUND TO ASN F 154
19CC1SOFTWAREASN I:63BINDING SITE FOR MONO-SACCHARIDE NAG I 701 BOUND TO ASN I 63
20CC2SOFTWAREASN K:63BINDING SITE FOR MONO-SACCHARIDE NAG K 701 BOUND TO ASN K 63
21CC3SOFTWAREASN L:63BINDING SITE FOR MONO-SACCHARIDE NAG L 701 BOUND TO ASN L 63

(-) SS Bonds  (30, 30)

Asymmetric Unit
No.Residues
1A:14 -B:137
2A:52 -A:277
3A:64 -A:76
4A:97 -A:139
5A:281 -A:305
6B:144 -B:148
7C:14 -D:137
8C:52 -C:277
9C:64 -C:76
10C:97 -C:139
11C:281 -C:305
12D:144 -D:148
13E:14 -F:137
14E:52 -E:277
15E:64 -E:76
16E:97 -E:139
17E:281 -E:305
18F:144 -F:148
19G:22 -G:92
20G:142 -G:208
21H:22 -H:92
22H:142 -H:208
23I:23 -I:88
24I:134 -I:194
25J:22 -J:92
26J:142 -J:208
27K:23 -K:88
28K:134 -K:194
29L:23 -L:88
30L:134 -L:194

(-) Cis Peptide Bonds  (21, 21)

Asymmetric Unit
No.Residues
1Ser L:7 -Pro L:8
2Asn L:76 -Pro L:77
3Asp L:94 -Pro L:95
4Tyr L:140 -Pro L:141
5Ser I:7 -Pro I:8
6Asn I:76 -Pro I:77
7Asp I:94 -Pro I:95
8Tyr I:140 -Pro I:141
9Ser K:7 -Pro K:8
10Asn K:76 -Pro K:77
11Asp K:94 -Pro K:95
12Tyr K:140 -Pro K:141
13Phe H:148 -Pro H:149
14Glu H:150 -Pro H:151
15Trp H:200 -Pro H:202
16Phe G:148 -Pro G:149
17Glu G:150 -Pro G:151
18Trp G:200 -Pro G:202
19Phe J:148 -Pro J:149
20Glu J:150 -Pro J:151
21Trp J:200 -Pro J:202

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MHH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MHH)

(-) Exons   (0, 0)

(no "Exon" information available for 4MHH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:324
                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeee.......ee.......ee...eee.ee......eee......ee....hhhhhhhhhhhhhhhh.......eee...........eee.hhhhhhhhhh.eeeeeeee..hhhhh........................eee..........eeeeee......eeeeeeeee..hhhhhhhhh......eeee....eeee...............eeeeeeeee....eeeeee...eeee.eeeeeeee....eee....eeeee..eee..ee......ee......ee...ee......eee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4mhh A    8 DPGDQICIGYHANNSTEQVDTIMEKNVTVTHAQDILEKKHNGKLCDLDGVKPLILRDCSVAGWLLGNPMCDEFINVPEWSYIVEKANPVNDLCYPGDFNDYEELKHLLSRINHFEKIQIIPKSSWSSHEASLGVSSACPYQGKSSFFRNVVWLIKKNSTYPTIKRSYNNTNQEDLLVLWGIHHPNDAAEQTKLYQNPTTYISVGTSTLNQRLVPRIATRSKVNGQSGRMEFFWTILKPNDAINFESNGNFIAPEYAYKIVKKGDSTIMKSELEYGNCNTKCQTPMGAINSSMPFHNIHPLTIGECPKYVKSNRLVLATGLRNSP  324
                                    17        27        37        47        56        66        76       |85        95 |     104       114       124 ||    132 |     141       151       161       171       181       191       201       211       221       231       241       251      260A       270       280       290       300       310       320    
                                                                          55A                          83A           96A                          125A|     133A                                                                                                                            260A                                                                
                                                                                                                                                   125B                                                                                                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:177
                                                                                                                                                                                                                  
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eeee....hhhhhhhhhh...hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4mhh B    1 GLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDGVTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPQYSEEARLKREEISSGR  177
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       


Chain C from PDB  Type:PROTEIN  Length:324
                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeee.......ee.......ee...eee.ee......eee......ee....hhhhhhhhhhhhhhhh.......eee...........eee.hhhhhhhhhh.eeeeeeee..hhhhh..ee.....eeeee....ee....eee.ee.......eeeeee......eeeeeeeee..hhhhhhhhh......eeee....eeee...............eeeeeeeee....eeeeee...eeee.eeeeeeee....eee....eeeee..eee..eee.....ee......ee...ee......eee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4mhh C    8 DPGDQICIGYHANNSTEQVDTIMEKNVTVTHAQDILEKKHNGKLCDLDGVKPLILRDCSVAGWLLGNPMCDEFINVPEWSYIVEKANPVNDLCYPGDFNDYEELKHLLSRINHFEKIQIIPKSSWSSHEASLGVSSACPYQGKSSFFRNVVWLIKKNSTYPTIKRSYNNTNQEDLLVLWGIHHPNDAAEQTKLYQNPTTYISVGTSTLNQRLVPRIATRSKVNGQSGRMEFFWTILKPNDAINFESNGNFIAPEYAYKIVKKGDSTIMKSELEYGNCNTKCQTPMGAINSSMPFHNIHPLTIGECPKYVKSNRLVLATGLRNSP  324
                                    17        27        37        47        56        66        76       |85        95 |     104       114       124 ||    132 |     141       151       161       171       181       191       201       211       221       231       241       251      260A       270       280       290       300       310       320    
                                                                          55A                          83A           96A                          125A|     133A                                                                                                                            260A                                                                
                                                                                                                                                   125B                                                                                                                                                                                                         


Chain D from PDB  Type:PROTEIN  Length:177
                                                                                                                                                                                                                  
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eeee....hhhhhhhhhh...hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4mhh D    1 GLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDGVTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPQYSEEARLKREEISSGR  177
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       


Chain E from PDB  Type:PROTEIN  Length:324
                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeee.......ee.......ee...eee.ee......eee......ee....hhhhhhhhhhhhhhhh.......eee...........eee.hhhhhhhhhh.eeeeeeee..hhhhh..ee.....eeeee....ee....eee.ee.......eeeeee......eeeeeeeee..hhhhhhhhh......eeee....eeee...............eeeeeeeee....eeeeee...eeee.eeeeeeee....eee....eeeee..eee..eee.....ee......ee...ee......eee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4mhh E    8 DPGDQICIGYHANNSTEQVDTIMEKNVTVTHAQDILEKKHNGKLCDLDGVKPLILRDCSVAGWLLGNPMCDEFINVPEWSYIVEKANPVNDLCYPGDFNDYEELKHLLSRINHFEKIQIIPKSSWSSHEASLGVSSACPYQGKSSFFRNVVWLIKKNSTYPTIKRSYNNTNQEDLLVLWGIHHPNDAAEQTKLYQNPTTYISVGTSTLNQRLVPRIATRSKVNGQSGRMEFFWTILKPNDAINFESNGNFIAPEYAYKIVKKGDSTIMKSELEYGNCNTKCQTPMGAINSSMPFHNIHPLTIGECPKYVKSNRLVLATGLRNSP  324
                                    17        27        37        47        56        66        76       |85        95 |     104       114       124 ||    132 |     141       151       161       171       181       191       201       211       221       231       241       251      260A       270       280       290       300       310       320    
                                                                          55A                          83A           96A                          125A|     133A                                                                                                                            260A                                                                
                                                                                                                                                   125B                                                                                                                                                                                                         


Chain F from PDB  Type:PROTEIN  Length:177
                                                                                                                                                                                                                  
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeeee..eeee..hhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eeee....hhhhhhhhhh...hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4mhh F    1 GLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDGVTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPQYSEEARLKREEISSGR  177
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       


Chain G from PDB  Type:PROTEIN  Length:222
                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee...eee........eeeee..hhhhheeeeeee.....eeeeeeee....eeee.hhhh.....eee....eee......hhhhheeeeeeee.......eeee...eeeee.........eeee..........eeeeeeeeeee.....eeee.hhh....eee...eee..eeeeeeeeeee.........eeeeeehhhheeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4mhh G    1 EVHLQQSGPELVKPGASVKMSCKTSGYTFTEYTIHWMKQSHGKSLEWIGGIFPNNGDTTYNQKFKVRATLTVGRSSSTAYMDLRSLTSEDSAVYYCVRNYGSSYGYFDVWGAGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDC  230
                                    10        20        30        40        50  |     59        69        79   |||  86        96    |||103       113       123      |135       145       156||     171       183       193  |||| 206       216      |228  
                                                                              52A                            82A||               100A||                           130|                  154|||    169|      180|          196|||                  223|    
                                                                                                              82B|                100B|                            133                   156||     171       183           199||                   226    
                                                                                                               82C                 100C                                                   157|                              200|                          
                                                                                                                                                                                           162                               202                          


Chain H from PDB  Type:PROTEIN  Length:222
                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eee...ee.....eeeeeeee...hhhhh.eeeeee.....eeeeeee......eee.......eeeeee....eeeeeee..hhhhh.eeeeeee.hhhhh.eeee...eeee..........eeee..........eeeeeeeeeee.....eeee.hhh.....ee...eee..eeeeeeeeeee.........eeeeeehhhheeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4mhh H    1 EVHLQQSGPELVKPGASVKMSCKTSGYTFTEYTIHWMKQSHGKSLEWIGGIFPNNGDTTYNQKFKVRATLTVGRSSSTAYMDLRSLTSEDSAVYYCVRNYGSSYGYFDVWGAGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDC  230
                                    10        20        30        40        50  |     59        69        79   |||  86        96    |||103       113       123      |135       145       156||     171       183       193  |||| 206       216      |228  
                                                                              52A                            82A||               100A||                           130|                  154|||    169|      180|          196|||                  223|    
                                                                                                              82B|                100B|                            133                   156||     171       183           199||                   226    
                                                                                                               82C                 100C                                                   157|                              200|                          
                                                                                                                                                                                           162                               202                          


Chain I from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee....eeeeeee...........eeeeee......eeeee...ee.......eeeeee..eeeeee........eeeeeee......ee...eeeeee......eeeee..hhhhhh..eeeeeeeee.......eeeeee..eee...eeeee...........eeeeeeeehhhhh...eeeeeee..........eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4mhh I    1 DIVLTQSPGSLTVSLGQRATISCRASESVDNFGKSFMHWYQQKPGQSPKLLIYRASNREFGIPARFNGSGSGTDFALTINPVEADDVATYFCQQSNEDPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE  213
                                    10        20       27C|       36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       
                                                     27A|||                                                                                                                                                                                          
                                                      27B||                                                                                                                                                                                          
                                                       27C|                                                                                                                                                                                          
                                                        27D                                                                                                                                                                                          


Chain J from PDB  Type:PROTEIN  Length:222
                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeee..hhhhheeeeeee.....eeeeeeee....eeee.hhhh..eeeeee....eeeeee........eeeeeeee.......eeee...eeeee.........eeee..........eeeeeeeeeee.....eeee.hhh.....ee...eee..eeeeeeeeeee.hhh.....eeeeeehhhheeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4mhh J    1 EVHLQQSGPELVKPGASVKMSCKTSGYTFTEYTIHWMKQSHGKSLEWIGGIFPNNGDTTYNQKFKVRATLTVGRSSSTAYMDLRSLTSEDSAVYYCVRNYGSSYGYFDVWGAGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDC  230
                                    10        20        30        40        50  |     59        69        79   |||  86        96    |||103       113       123      |135       145       156||     171       183       193  |||| 206       216      |228  
                                                                              52A                            82A||               100A||                           130|                  154|||    169|      180|          196|||                  223|    
                                                                                                              82B|                100B|                            133                   156||     171       183           199||                   226    
                                                                                                               82C                 100C                                                   157|                              200|                          
                                                                                                                                                                                           162                               202                          


Chain K from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee....eeeeee............eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhh.eeeeee......ee...eeeeee......eeeee..hhhhhhhheeeeeeeeeee......eeeee..eee...eeeeee........eeeeeeeeeehhhhh...eeeeee............ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4mhh K    1 DIVLTQSPGSLTVSLGQRATISCRASESVDNFGKSFMHWYQQKPGQSPKLLIYRASNREFGIPARFNGSGSGTDFALTINPVEADDVATYFCQQSNEDPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE  213
                                    10        20       27C|       36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       
                                                     27A|||                                                                                                                                                                                          
                                                      27B||                                                                                                                                                                                          
                                                       27C|                                                                                                                                                                                          
                                                        27D                                                                                                                                                                                          


Chain L from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee....eeeeeee...........eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhheeeeeee......ee...eeeeee......eeeee..hhhhhh..eeeeeeeee..........eee..eee...eeeee...........eeeeeeeehhhhh...eeee..............ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4mhh L    1 DIVLTQSPGSLTVSLGQRATISCRASESVDNFGKSFMHWYQQKPGQSPKLLIYRASNREFGIPARFNGSGSGTDFALTINPVEADDVATYFCQQSNEDPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE  213
                                    10        20       27C|       36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       
                                                     27A|||                                                                                                                                                                                          
                                                      27B||                                                                                                                                                                                          
                                                       27C|                                                                                                                                                                                          
                                                        27D
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MHH)

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(no "CATH Domain" information available for 4MHH)

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(no "Pfam Domain" information available for 4MHH)

(-) Gene Ontology  (17, 51)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HEMA_I03A0 | Q6J8F6: 3fku 3znk
        HEMA_I96A0 | Q9Q0U6: 3s11 4mhi 4mhj
        Q6DQ33_9INFA | Q6DQ33: 3fku
UniProtKB/TrEMBL
        Q6DQ33_9INFA | Q6DQ33: 3gbm 4fqi 4kdm 4kdn 4kdo 4n5y 4n5z 4xnm 4xnq 4xrc 5a3i

(-) Related Entries Specified in the PDB File

2fk0 INFLUENZA VIRUS HEMAGGLUTININ FROM A/VIET NAM/1203/2004 (H5N1)
3gbm INFLUENZA VIRUS HEMAGGLUTININ FROM A/VIET NAM/1203/2004 (H5N1)
4mhi
4mhj